BAC Information

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BAC

Clone NameMSMg01-456E02
Chromosome5 (Build37)
Map Location 104,521,276 - 104,521,507
singlet/doubletsinglet
Overlap geneSparcl1
Upstream geneMapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9
Downstream geneLOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456E02.T7 (MSMg01no456_e02.b1)MSMg01-456E02.TJ (MSMg01no456_e02.g1)
ACCAG542601AG542602
length746808
length of high quality
(start - end)
374 (50 - 423)232 (79 - 310)
definitionCHROMAT_FILE: MSMg01no456_e02.b1 PHD_FILE: MSMg01no456_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:01 2005CHROMAT_FILE: MSMg01no456_e02.g1 PHD_FILE: MSMg01no456_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAGTTTACCTATATAAAGAACTCAAAAAAACAAAGAATCA
AGAAGACACATTGTCCTAGTCATGGTTCTATTGTTGTGAAGAGACCAAAT
AGGTAAGTCCTTATTGCTGAAGATACCATGCATTTTAGACACAGGGTCTA
GATGCATCTGAACAGAAACTGACTTGAATGGCGTCCCTGAAGCCTAGCTT
CTATGGTACCAGATGCCACCTTGCAAGCTTCTAAAGGAGGGAGACAACCA
AAAGTCCTATCCAACTATGATACTCATGAACCGTAATAATGACCAGCAAG
ACATGAGAACTATAAGGTGTGGCAGTGGCACACATACCTTGGGGGTGACT
GTACTGGCTGGTTTTATGTCAACCTGACACAAGCTAGAGCTATCAGAGAG
GAGGGAATCTCAATTGAGAAAATACCTCCAATAAGATCCAGCTGTAACAC
ATTTTCTCAATTAGTGATCCATGTGTGAGGCCCACCCCATTGTGTTTATT
GCCTATCTCGGCCCCTGCGCTCCTGGGTTCCTATAACCATATTTGTTTGA
TCCAGCCCCTTTTTTCTTGTTTTGTAATTTCACTCCCCTTCTTGCCCTTC
CTGCATATATTCTCCCGATTTCCATTTCCCCTTCTTCTATCTTTCTTTCC
TTTATACTCCCTTATCTCAATAATTTCTTTATGCGCGCTTTTCCAT
TTCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAGGCCGAAAGGATGCATT
CCCTCTCCTATTACCTCAAATATGGCGGCGGCGAGGAGACAACGACTGGC
GAGAGTGAGAACCGGAGGGAGGCTGCAGACAACCAAGAGGTGAGCGAGAA
TAGTCTTAGCTGTGCTACCCACATCCCCGCACCCTGGTGTACGTGTTTAT
AGCAGGACTTACTAAAATACAGAGCAGGGTGAGTATCCTCATCTGACGTG
ACTGAGAACAAAAGCATTGCGATTGGTTTTTTTTTTTCATCCCTCTCTTC
GCTCCGTCCCTTCTCTCCCCGTCCGGTCCTTTTTCCCTGTTTCTTTCCCC
CTTCTTTCGTTCTTCTTCTTTGTTCCCGCTTTCCTCTCTTTTCCTTCCTT
TTTTGTTTCTTTTCCGTCCGCGCTTTTCCTCTCCTTTTCTCCCTTCTTTG
TCCCTCTCCCCCTTCTTTTTTCCCTCCCCCTTTTTTGCTTCTCCTTTTCC
TCTCCTTTCCCCTTCTCCCTTTCCCTTTTTTTTTTCCCCCCCTTCCTCTC
CACTTTCCTCCTCCTTTTTTCCTCCCTTCTTTTCCCCTCCCTTTTTCCTT
TTCTCTCCCCCCCTCTCTCTTTCCCCTCTCTCTGCTCCCTTCCTTTTCTC
TCTTTTCCCCTTCTCTACTTTTTCCTTCTCCTCCTTCCTCCTCTTTCCCC
TTCCTTTCCCTCTCCCCTCCCCTCCTTTTTTCCTTTCCTTCTCTTTCCTC
TTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_e02.g1 MSMg01no456_e02.g1 CHROMAT_FILE:
MSMg01no456_e02.g1 PHD_FILE: MSMg01no456_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:01 2005
         (232 letters)



>mm_chr5_104521076_104521707
          Length = 632

 Score =  426 bits (220), Expect = e-124
 Identities = 229/232 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaggccgaaaggatgcattccctctcctattacctcaaatatggcggcggcgaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctagaggccgaaaggatgcattccctctcctattacctcaaatatggcggcggcgaggag 373

                                                                       
Query: 61  acaacgactggcgagagtgagaaccggagggaggctgcagacaaccaagaggtgagcgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acaacgactggcgagagtgagaaccggagggaggctgcagacaaccaagaggtgagcgag 313

                                                                       
Query: 121 aatagtcttagctgtgctacccacatccccgcaccctggtgtacgtgtttatagcaggac 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 312 aatagtcttagctgtgctacccacatccccgcaccctggtgtgcgtgtttatagcaggac 253

                                                               
Query: 181 ttactaaaatacagagcagggtgagtatcctcatctgacgtgactgagaaca 232
           |||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 252 ttactaaaatacagggcagggtgagcatcctcatctgacgtgactgagaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)