BAC Information

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BAC

Clone NameMSMg01-456E11
Chromosome5 (Build37)
Map Location 10,090,509 - 10,090,927
singlet/doubletsinglet
Overlap genenone
Upstream gene4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3, LOC100042768, LOC625446
Downstream geneLOC435832, LOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456E11.T7 (MSMg01no456_e11.b1)MSMg01-456E11.TJ (MSMg01no456_e11.g1)
ACCAG542619AG542620
length623750
length of high quality
(start - end)
---420 (80 - 499)
definitionCHROMAT_FILE: MSMg01no456_e11.b1 PHD_FILE: MSMg01no456_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:03 2005CHROMAT_FILE: MSMg01no456_e11.g1 PHD_FILE: MSMg01no456_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTCTTGCGCGCCCCCNNNNNCCTCCTTCTATXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCGCGNGAATTCAAGTTTTTCCGTAC
CTAAANNCNNNTAACAAAAGCCAATCCTAATCAGCAAAAACCAAAGNTAA
GNCCCAACCAATTTCCAAATACCTAAAAAATTGGGGTAGGAAGGGAAAAA
CTTTCGGGAAAAAGGCCAAAATTCCCCCCTCAACCCTTTTAAAAAAAAAA
AAAAATTTTCCCCCAAAAAAGGGGGGGGGGGGGTGGTGTGTTTAAAAAAA
AAACTCTCCCCCTCTTTTTTCATTTTTCCTTAATAAAACACCGAGGTTGT
CCNAAAAAGCTCAAATCCAATATACTTTAAAATTTTACACCTTACCCTCC
CATTTTCTCTTCCTTTATAAAGCAACCCGTAGGGGTTCTGGGGTTTTAGG
ACCCGGCCGGTCTTCCTTCCCAGGACCACATAGAATATATAATTTTTCAC
AAATATTGTGGATCTTTGGGTTCTNCTATGTACTCTTGTCTTTAGTTGNT
CCACTCCTCCCCCTCTCACTCCCTTNGCTTCCCGATACAATAATACTNTA
CCCCACTTCTCTCTCTTTTTTCG
TTTCCCAATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTCTTAAGATTACTCACA
AATAAATCCAACAGTCCTGTTTCAGTAACAAAAACACTTACAAACGAATA
ACTACGCACATATCTCCCCCACCACCCCTCGTACAGACCGAAAACTGGAA
GGCAAAGATGATTCCAAGGTCCTGGGTTGGACACCCAGCAGAAAAGCCAA
GATCTGTCCAAGCCAGCCATGCCCATGGTTGCCTGCTCCCTACTTGGTTT
TGACCAGCTTGGGACTCATATGATCATCACACATTACCACTGAGGGCTAT
GCAAATGTCTGTAATCTGTGCTGAAACCTGAAGCCATGTAAACCAGGATG
CTGCTGAGGCCCACACTGGTTTAAATGGCCTATAATACCACCTGGGGTCA
TGGTGATGTCACATACTCATACTGCCATTGAGGGTCACATCTGGATCCCA
GGCCTGACTGAACCTGAAATGCTGGGTGTGTTGCCTCCTTTATTTCTCCT
CTTTTTTTATTTCTATTTCCCCCCTTCTCTTTCGTTTTCCGTCTTCTTCT
CCTTTATTGCTACATTTTTCAATTTTCACACTTATCAACTCTACCTCCTT
TTTTTTTTTTTTCCATAAAACTAACACCTATTTATTTATTTCTACTCTAC
TTCACCATATCCCTCCGATCTTCCTCTCTTCTCTTGCTCTCTTCTCTGTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_e11.g1 MSMg01no456_e11.g1 CHROMAT_FILE:
MSMg01no456_e11.g1 PHD_FILE: MSMg01no456_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:03 2005
         (420 letters)



>mm_chr5_10090484_10091303
          Length = 820

 Score =  712 bits (368), Expect = 0.0
 Identities = 407/420 (96%), Gaps = 2/420 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtcttaagattactcacaaataaatccaacagtcctgtttcagtaacaaaaacactt 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 444 actgtcttaagattactcacaaataaatcaaacagtcctgtttcagtaacaaaaacactt 385

                                                                       
Query: 61  acaaacgaataactacgcacatatctcccccaccacccctcgtacagaccgaaaactgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acaaacgaataactacgcacatatctcccccaccacccctcgtacagaccgaaaactgga 325

                                                                       
Query: 121 aggcaaagatgattccaaggtcctgggttggacacccagcagaaaagccaag-atctgtc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct: 324 aggcaaagatgattccaaggtcctgggttggacacccagcagaaaagcc-agcatctggc 266

                                                                       
Query: 180 caagccagccatgcccatggttgcctgctccctacttggttttgaccagcttgggactca 239
           ||||| ||||||||||||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct: 265 caagctagccatgcccatggttgcctgctccttacttggttttcaccaccttgggactca 206

                                                                       
Query: 240 tatgatcatcacacattaccactgagggctatgcaaatgtctgtaatctgtgctgaaacc 299
            |||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gatgaccagcacacattaccactgaggactatgcaaatgtctgtaatctgtgctgaaacc 146

                                                                       
Query: 300 tgaagccatgtaaaccaggatgctgctgaggcccacactggtttaaatggcctataatac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tgaagccatgtaaaccaggatgctgctgaggcccacactggtttaaatggcctataatac 86

                                                                       
Query: 360 cacctggggtcatggtgatgtcacatactcatactgccattgagggtcacatctggatcc 419
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 85  cacctggggtcatggtgatgtcccatactcatactgccattgagggtcacatctggatcc 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)