BAC Information

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BAC

Clone NameMSMg01-456G09
Chromosome5 (Build37)
Map Location 151,443,698 - 151,444,188
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik
Downstream geneBC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456G09.T7 (MSMg01no456_g09.b1)MSMg01-456G09.TJ (MSMg01no456_g09.g1)
ACCAG542710AG542711
length7281,078
length of high quality
(start - end)
499 (76 - 574)---
definitionCHROMAT_FILE: MSMg01no456_g09.b1 PHD_FILE: MSMg01no456_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:12 2005CHROMAT_FILE: MSMg01no456_g09.g1 PHD_FILE: MSMg01no456_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAAAGAGGATCCGC
GGAATTCAGGATACCCCAGAACTACACAGAGAAAACAGACCATACCAAAA
CAAAAACAAACAAACAAAAAAACCCCAACAACACTAGATTAATAGCACTA
TGACTCTGAAATGAAGCTTCTAACATGTGTGCAAGTACAAGTCTATGTGT
ACAGGTGCATAAAAGGCTAGAGGTATTGGATTCCACAATACCTGGAGTTA
CAAGGGGTCATGTGCCACCTCATATGGGTGCTGGGAATCAAACTTGGGTC
CTCTGGAAGAGCACTTTCTTTTAACCACCGAGCCATGTCTCAATTCTGAA
TAAAGTTTCTTAAAGACACAGCATATCCTAACAGTCAAGCTTAAATTTTT
AGCATGATTTTCAAACTGCGCAAATCTAAATAATATACTGGAAAACATAA
ATCTAAATTAAAAGCAACCTTATGTTAAAGAGATATGTATAATGTAATAC
ACATACATACCTACAACTACACACAGATATGTTAGCATATTTTTACTATG
TGTTTAGCTAAGATGATAAAATACGTACAAACACACATGTGCTTAAACAG
ATAAGATGACCCGAGTTGGGATCTACTCACAGAGGAATTGTCATAGTATT
TAGGTAAATAGCAGTTAGAGTCTCCAACAGGTGAGTAAGGAGAAGGGTAG
CCTGGCCTACCGTTTCTACTTCTCCGCC
GAGAGATGTGGGAGAGAGAGGGTTAGGAAGGGAGAGCGGTTCCCCTCCAC
CGAGTGCTGCGGGCCCGCTCTTATACTCCCCCCACACACGAGCTGACCTG
TGCTGCTCCCTATTACTCTCTCCTCACTTGCTTCCGTTTACCTCAAATCC
ACTACATATTTTATGAAAAGGAATCATATACATAACATACCTCATTTACA
CTTATACGTTATGAGCATCAGCTCCTACTCTTAGACTATACTGAGAACTA
ACTACACGAACGAGAAGTAAATAGTGAAGTAATAACAATACGTATGACAA
TGCGATATTATGTACTCCAATAAGGCCTTGACGTTATCTTCCCACCTATG
TTTATGCATCCATGAGATGTAGCCAGGTTGAGCTGAGGTTCGCGCAAGTT
GTGGCTCCATGCTATGAGGTTGTTGGCTTTGTGTCGTGTGTAAAGCAATC
TNTGTGCTATCTTATTTATTATAAATACATTAACTAAGTCAGACAGATAT
AAAATATATACTGGATGGTATGTGCGCTTGTGCGACCCCGCTAGAACTGA
TTGTAGCGAGTATCTCAGTGTTGTTGTCGGCCGCGCGTGAATGGACTACG
TGATACGTAAAGTGTGATGTATTTGGCCGTAGGGCGGGATACATCATTGT
GAGCGCTGCAGACAAGAAGATCACAGTATATCATATATAACTAAGAATAC
ACAGCCGCAGATGCTATAATGAATATCGGCATAGCAGATCTGGACGAAAT
GACTGTATGCAGTACACGCCCAGTAGCGTAACATGATCATGAGTGCTCGA
CACTGATCCAAAGAGATTGTAAGAGTATAATCGACGCATAACATACGCAC
GGTCGTATGATGTACCGTAAGTGTGCGGCGCTTGGTTGTGAAACGGACAT
CACGGCGCGTGTAGCCGCCGGCCAAGAGACAGACAGAGGAGATGAACGTC
TGTGTCACATATTCGGCGGCAATGAAATGGTCGCGAGGAATAGCATAGTA
TATAACTAAGTACTAAATGTCCGCGAAATGTGACAGAACGTTTGCTCAGG
CAGAACGTGACGGGTATGCCCGAAGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_g09.b1 MSMg01no456_g09.b1 CHROMAT_FILE:
MSMg01no456_g09.b1 PHD_FILE: MSMg01no456_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:12 2005
         (499 letters)



>mm_chr5_151443498_151444396
          Length = 899

 Score =  861 bits (445), Expect = 0.0
 Identities = 482/499 (96%), Gaps = 8/499 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagaaaacagaccataccaaaacaaaaacaaacaaacaaaaaaaccccaacaacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 acagagaaaacagaccataccaaaacaaaaacaaacaaacaaaaaaaccccaaaaacact 260

                                                                       
Query: 61  agattaatagcactatgactctgaaatgaagcttctaacatgtgtgcaagtacaagtcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agattaatagcactatgactctgaaatgaagcttctaacatgtgtgcaagtacaagtcta 320

                                                                       
Query: 121 tgtgtacaggtgcataaaaggctagaggtattggattccacaatacctggagttacaagg 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtacaggtgcataaaaggctagagatattggattccacaatacctggagttacaagg 380

                                                                       
Query: 181 ggtcatgtgccacctcatatgggtgctgggaatcaaacttgggtcctctggaagagcact 240
           |||||||||||||||||||||||||||||||||||||        |||||||||||||||
Sbjct: 381 ggtcatgtgccacctcatatgggtgctgggaatcaaa--------ctctggaagagcact 432

                                                                       
Query: 241 ttcttttaaccaccgagccatgtctcaattctgaataaagtttcttaaagacacagcata 300
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tactcttaaccaccgagccatgtctcaattctgaataaagtttcttaaagacacagcata 492

                                                                       
Query: 301 tcctaacagtcaagcttaaatttttagcatgattttcaaactgcgcaaatctaaataata 360
           || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 493 tcttaacagtcaagcttaaatttttagcatgattttcaaactgtgcaaatctaaataata 552

                                                                       
Query: 361 tactggaaaacataaatctaaattaaaagcaaccttatgttaaagagatatgtataatgt 420
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 553 tactggaaaacacaaatctaaattaaaagcaatcttatgttaaagagatatgtataatgt 612

                                                                       
Query: 421 aatacacatacatacctacaactacacacagatatgttagcatatttttactatgtgttt 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 613 aatacacatacatacctacaacgacacacagatatgttagcatatttttactatgtgttt 672

                              
Query: 481 agctaagatgataaaatac 499
           |||||||||||||||||||
Sbjct: 673 agctaagatgataaaatac 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)