BAC Information

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BAC

Clone NameMSMg01-456H08
Chromosome5 (Build37)
Map Location 18,464,135 - 18,464,384
singlet/doubletsinglet
Overlap genenone
Upstream geneGnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456H08.T7 (MSMg01no456_h08.b1)MSMg01-456H08.TJ (MSMg01no456_h08.g1)
ACCAG542756AG542757
length738766
length of high quality
(start - end)
545 (45 - 589)242 (79 - 320)
definitionCHROMAT_FILE: MSMg01no456_h08.b1 PHD_FILE: MSMg01no456_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:17 2005CHROMAT_FILE: MSMg01no456_h08.g1 PHD_FILE: MSMg01no456_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCG
CGGAATTCTCATTATCGGAGTCTCAAATGGCTGAGAAACATTTAAATCAA
TATTCAATATCCTTAGCCAGCAGAGAAATGTGAATCAAATGACTCTAACA
TTCTATCTTCCCAGTCAGTACAGCTAAGATCAAAAACGCAAATGACAACT
CAAGCTGGTGAGAATGTGGATCAAGGGAAACACTCATCAATTAGTGATGG
GCATGCAAGATTGTAAAGCCACCTTGGAAATCAATATGGTGGTTTCTCCC
AAAATTGGGAATTGATTTTCCTCAAGATCTAAATATATCACTTCAGGGCA
TATACCCAAAGGAACCTTCACTATACCACATGGATACTTGTTTAACTATA
TTCATAGCACATTAGTTCACAATGCCGAGACACCGAAAACAACTTAGATG
TCCCTAAACTAAAGTCTGGTGAAACAAAAGAATGTGGTACATTTACAGTG
TATTCATTCTTAAGATCAGCTACATGAAAGTGAAAACTAACATACAATGA
TACATGGCAAACTATATCTGAACAATTTTACCTTTGTAGTGGATCATTTA
TTTGAATTTATTGGTTTAAAATTTCCTCTGGGAAAAAAGTTTAAATTTTT
AAAAATACTAACCAGGCTCTAGGGGAATTGGTTCACCAAAGAAAAGCAGT
GGTTTTCTATAAACTTAAAGAAGGCTTTATCCCTGAAA
NCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCATCCAGAGGCTTCAAGTA
GACAAGTAGGGACATGTAATATAATTCTGATGTGTGTGTGCTCTGAAGAC
AGAAATTTTTATTAATAAACGTCCTGGAAGATGGGAAATACCTCAGCCTC
TGAGACTGTAACAACAATTTGGTAAGACTTGTTGAAACTCCTGGTGAAGC
AGAATATAAATGCTGATGGGAGATTGCTTATCAGAAGCACGCATCAGGGT
AGACACAGGAGGCAGAAATGTCGTCCATTTCTTACAGAGAACCTGGAAAG
TGAGCTACATCTGGGACTAGAAAACATCTTCACATGGTGGGAGGCTTGAA
TGCCAGTGATTTAAAGTGCTCACCGTTTCCAGCTGCATGAAGAGAGTTGT
TTTGTTTTGTTTCTCACTTTCCTAGGAAAACAAATCTAATTTTGCATTGT
AAAAGCAGATAGTGGTTTTTATGGATAAGGTTACTTTTGATTGAATGTAT
TTTACTATCGCTGATTTATTAAGGTTACAGATTCGCCTATTTTTCTTCAG
TGCATTCTTACATTTATTATCCTTTCTTTTTTCCATACCACTCCTTAATT
ATTTTACTTTTTCTTTTTTTTTTTTTACATTTTTCTTCGTCCTTCTTATT
CTTTCTTTTTTTCTCCCTCTCTTTTCTTTTCTCTATTTTTTTAACTCTTC
TCCTCTTCCCTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_h08.g1 MSMg01no456_h08.g1 CHROMAT_FILE:
MSMg01no456_h08.g1 PHD_FILE: MSMg01no456_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:17 2005
         (242 letters)



>mm_chr5_18463997_18464638
          Length = 642

 Score =  410 bits (212), Expect = e-119
 Identities = 236/250 (94%), Gaps = 10/250 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcatccagaggcttcaagtagacaagtagggacatgtaatataattctgatgtgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 388 aggcatccagaggcttcaagtagacaagtagggacatgtaatacaattctgatgtgtgtg 329

                                                                       
Query: 61  tgctctgaagacagaaatttttattaataaacgtcctggaagatgggaaatacctcagcc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 328 tgctctgaagacagaaatttttattaacaaacgtcctggaagatgggaaatacctcagcc 269

                                                                       
Query: 121 tctgagactgtaacaacaatttggtaagacttgttgaaactcctggtgaagcagaatata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 268 tctgagactgtaacaacaatttggtaagacttgttgaaactcctggtgaagcagaagaga 209

                                                                       
Query: 181 aatgctga----------tgggagattgcttatcagaagcacgcatcagggtagacacag 230
           ||||||||          ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aatgctgagcacttgcgatgggagattgcttatcagaagcacgcatcagggtagacacag 149

                     
Query: 231 gaggcagaaa 240
           ||||||||||
Sbjct: 148 gaggcagaaa 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)