Query= MSMg01no456_j23.b1 MSMg01no456_j23.b1 CHROMAT_FILE:
MSMg01no456_j23.b1 PHD_FILE: MSMg01no456_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:30 2005
(435 letters)
>mm_chr5_83732025_83732860
Length = 836
Score = 803 bits (415), Expect = 0.0
Identities = 433/443 (97%), Gaps = 9/443 (2%)
Strand = Plus / Plus
Query: 1 taagttataattcattaattcatttattttatattttgttaatatgctttttccttcagg 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 taagttataattcattaagtcatttattttatattttgttaatatgctttttccttcagg 254
Query: 61 tttctctgcattacatatatgaaccagttttttcattctttctttctttttttttttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tttctctgcattacatatatgaaccagttttttcattctttctttctttttttttttttt 314
Query: 121 tt-------gacttttttttttcttttgaagttgtattcctttaagtagacaatggaggt 173
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttttttttggacttttttttt-cttttgaagttgtattcctttaagtagacaatggaggt 373
Query: 174 ccttttgagtctttggaatgtctatggcatcttcatcttggtgaattatttccctttgtt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccttttgagtctttggaatgtctatggcatcttcatcttggtgaattatttccctttgtt 433
Query: 234 atatgtagaatattgaatctagggccccatgctactaaagcatatatagctaagttctac 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atatgtagaatattgaatctagggccccatgctactaaagcatatatagctaagttctac 493
Query: 294 atataaatctgtccagtagctgcatagaaagtaaacaccttttctacactctagcatctg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atataaatctgtccagtagctgcatagaaagtaaacaccttttctacactctagcatctg 553
Query: 354 ggttaattatgttagttgatacaatctacaggtcataggaatccttgcatcttgtattct 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggttaattatgttagttgatacaatctacaggtcataggaatccttgcatcttgtattct 613
Query: 414 ttaaaaaaaaa-gagagaaaaca 435
||||||||||| |||||||||||
Sbjct: 614 ttaaaaaaaaaagagagaaaaca 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space: 352302
Effective search space used: 352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no456_j23.g1 MSMg01no456_j23.g1 CHROMAT_FILE:
MSMg01no456_j23.g1 PHD_FILE: MSMg01no456_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:30 2005
(190 letters)
>mm_chr5_83895933_83896521
Length = 589
Score = 344 bits (178), Expect = 2e-99
Identities = 187/190 (98%), Gaps = 1/190 (0%)
Strand = Plus / Minus
Query: 1 caaaagtttacaggagctgattcatgaagatatttgcccacaatcttctaacaagatggg 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 389 caaaagtttacaggagctgattcatgaagatatttgcccacaaccttctaacaagatggg 330
Query: 61 aaaagtaaagcagaaaataagaaaaactcttttctgttctgatcatgctgacaagaaaaa 120
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 329 aaaagtaaagcagaaaataagaaaaact-tgttctgttctgatcatgctgacaagaaaaa 271
Query: 121 tggttttaatttaaatctcttcttttctagttcttgtacacatctgtagttatattctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tggttttaatttaaatctcttcttttctagttcttgtacacatctgtagttatattctgt 211
Query: 181 ctgtataagg 190
||||||||||
Sbjct: 210 ctgtataagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 589
Length adjustment: 8
Effective length of query: 182
Effective length of database: 581
Effective search space: 105742
Effective search space used: 105742
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
