BAC Information

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BAC

Clone NameMSMg01-456L04
Chromosome5 (Build37)
Map Location 83,991,235 - 83,991,473
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456L04.T7 (MSMg01no456_l04.b1)MSMg01-456L04.TJ (MSMg01no456_l04.g1)
ACCAG542939AG542940
length743791
length of high quality
(start - end)
576 (43 - 618)242 (80 - 321)
definitionCHROMAT_FILE: MSMg01no456_l04.b1 PHD_FILE: MSMg01no456_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:36 2005CHROMAT_FILE: MSMg01no456_l04.g1 PHD_FILE: MSMg01no456_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTACCTCTGAGGTACCAGAGAACTCCTAAAGCTTACAAACAAC
TTCAGCAAAGTAGATGGATATAAAATTATCTCAAACCAATCATTGTCCTT
CCTCTACACAAAGATTAAACTGGCTGAGAAAGAAAATGGGAAACAACACC
CATCACAATAGTTAGAAAAATTATAAAGTACCTTGGTGTGACTCTAACTA
AGGAAGTGAAAGATCTGTATGACAAGAATTTCAAGTCTCTGTAGAAAGAA
ATCAAAGAAGATCTCAGAGGGATGCTCCAACATGTAACACATGCTCCACT
ATGTTCATGGCAGCCTTATTTATATTAGCCAGGAGCTGGGAAAAAACAAC
AACAAGAACAACAAACAACAACAACAACAAAACAAAAACAAAAACAAATG
TCCCTCAACAGAGGAATGGATATAGAAAATGTGGTACATTTACACATTTG
AGTACTATTAAATCAATGAATTTATGAAATCTTAGGCTAATGGATGGAAC
TAGATAATATCATCTTGAATGAGGGTAACAAATCACAAAAGAGCAGACAT
GATATGCACTCACTGATAAGTGGATATCAGTCCAGAAGCTTGGAATACCC
CAGATACAATTCTTCAACCACCTGAAACTCCTGAAGAAAGAGGATCAATG
TATGGATACATTCCTCCCTCTGAGAAAGGGGGAAAAATTAAAC
TAAACGAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTATTTAAAGCCCATAGAG
AATCAATTGGGATAGATGAAATGTTACCCAGGTGAATTGCTGTTGGCTGA
GAGATTAATGGGAAGACTCCTGGAGAAGACCCAGAGGTTTATTATCATGT
CTTAACTCTCTGTCATTGAGAATCCTGTTGGAACTATAGAACTGCCATCA
TTGTTGCTAGTGTTGTGGCCCCTGATAAGTTACTATTGCTCAAGCATCAC
CTCTCATCTATGATATGTGAGCAATATTTTTTCTGTTAAACGTTGTAGGT
CAAACAATGAAGACACACAATGAGGAGGAAGACCTGTTGACGAATATTTT
CAGCAATAAAAGAGAGGGGTATAATAGGGGTGTGAAGGCGTCTTTAACTC
CTCCCTTTCTATGTTTCTATCCTCCTTCTCTTCTTTTTTTCCTTCTTTTT
CTACCTACCTCTTCTTTTTTCCCTATCCCTTTTGTCTCTCTTTCCTCTCT
TTTTCACCCCCTTTTTTTTGCCCTTTCCTTTTTTCCCATTTTTTTCTTCG
TCCCTTTTCCTTCCTTCTTACTTCCTATTTCTTTCTGTTCCCCTCTTTCT
TCTTTTTTTTTCTTTTCCCTTCTTTTCTTTCCTCCTTTTTTTTCCTTTCC
TCCTTCACATTCCCCTCCTTTTCACTTCCTCTCCTTTTTTTTTTACCTCC
CTTTTTTATTTCTCCTACTATTTTATCTTCCATTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_l04.g1 MSMg01no456_l04.g1 CHROMAT_FILE:
MSMg01no456_l04.g1 PHD_FILE: MSMg01no456_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:36 2005
         (242 letters)



>mm_chr5_83991035_83991676
          Length = 642

 Score =  416 bits (215), Expect = e-121
 Identities = 233/239 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctatttaaagcccatagagaatcaattgggatagatgaaatgttacccaggtgaattg 60
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 atctatttaaagccaatagagaatcaattgggatagattaaatgttacccaggtgaattg 260

                                                                       
Query: 61  ctgttggctgagagattaatgggaagactcctggagaagacccagaggtttattatcatg 120
           ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ctgttggctgagagattaaagcgaagactccaggagaagacccagaggtttattatcatg 320

                                                                       
Query: 121 tcttaactctctgtcattgagaatcctgttggaactatagaactgccatcattgttgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttaactctctgtcattgagaatcctgttggaactatagaactgccatcattgttgcta 380

                                                                      
Query: 181 gtgttgtggcccctgataagttactattgctcaagcatcacctctcatctatgatatgt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gtgttgtggcccctgataagttactattgctcaagcatcacctctcatctatgagatgt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)