Query= MSMg01no456_l21.b1 MSMg01no456_l21.b1 CHROMAT_FILE:
MSMg01no456_l21.b1 PHD_FILE: MSMg01no456_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:40 2005
(199 letters)
>mm_chr5_69477166_69477764
Length = 599
Score = 356 bits (184), Expect = e-103
Identities = 193/196 (98%)
Strand = Plus / Plus
Query: 1 agcatcttaagagaagaacttcaaaagttcttttactgtgaagcttttccttcttctgct 60
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 201 agcatcttaagagaagaacttcaaaagttctttcactgtgaagcttctccttcttctgct 260
Query: 61 ccgggtactatgtgccaaggaatgaaaactgcagaagagttccttactttctcaaactag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgggtactatgtgccaaggaatgaaaactgcagaagagttccttactttctcaaactag 320
Query: 121 gttttctaaaaaatatgaatgtaagttatagaaaatgataatgaaagaatgatagggtag 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttctaagaaatatgaatgtaagttatagaaaatgataatgaaagaatgatagggtag 380
Query: 181 ggaggagagggtgaaa 196
||||||||||||||||
Sbjct: 381 ggaggagagggtgaaa 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space: 112881
Effective search space used: 112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no456_l21.g1 MSMg01no456_l21.g1 CHROMAT_FILE:
MSMg01no456_l21.g1 PHD_FILE: MSMg01no456_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:40 2005
(416 letters)
>mm_chr5_69650092_69650905
Length = 814
Score = 716 bits (370), Expect = 0.0
Identities = 404/416 (97%), Gaps = 2/416 (0%)
Strand = Plus / Minus
Query: 1 tgtactcttaaaaaaaaaaagagtaggaaaaaggccacacactgacacatagaggagagt 60
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 614 tgtactctttaaaaaaaaaagagtaggcaaaaggccacacactgacacatagaggagagt 555
Query: 61 cctaatttcatcctacccatttttctgaggtcgacctgcttgctgcacagcttagaacac 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 554 cctaatttcatcctacccatttttctgaggtcaacctgcttgctgcacagcttagaaaac 495
Query: 121 tatttctaatgactctgtgattaggaggatgataaatcaaatgttctgctccgtgtttta 180
|||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 494 tatttctaatga--ctgtgattaggaggaagataaatcaaatgttctgctctgtgtttta 437
Query: 181 agaagcagcaggaacaaaagcagtgaagtacaatatcagtacacagaaggctgaagcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agaagcagcaggaacaaaagcagtgaagtacaatatcagtacacagaaggctgaagcaga 377
Query: 241 ggggctgtgttgttcaggattgccttagctagaaattaagatcctatctcgtaacatgag 300
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gggactgtgaggttcaggattgccttagctagaaattaagatcctatctcgtaacatgag 317
Query: 301 aacaacaaaattgagaataaaagcaatgatctggaataaaaattagatcacacaataatt 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 316 aacaacaaaattgagaataaaagcaatgatctggaataaaaattagatcatacaataatt 257
Query: 361 attatcatcaaaattttagataagttttgaaactatggctcattgaataacatggg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 attatcatcaaaattttagataagttttgaaactatggctcattgaataacatggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 814
Length adjustment: 9
Effective length of query: 407
Effective length of database: 805
Effective search space: 327635
Effective search space used: 327635
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
