BAC Information

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BAC

Clone NameMSMg01-456P06
Chromosome5 (Build37)
Map Location 139,785,617 - 139,936,693
singlet/doubletdoublet
Overlap geneCox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30
Upstream geneGot2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1
Downstream geneZfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456P06.T7 (MSMg01no456_p06.b1)MSMg01-456P06.TJ (MSMg01no456_p06.g1)
ACCAG543134AG543135
length800810
length of high quality
(start - end)
234 (79 - 312)211 (74 - 284)
definitionCHROMAT_FILE: MSMg01no456_p06.b1 PHD_FILE: MSMg01no456_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:58 2005CHROMAT_FILE: MSMg01no456_p06.g1 PHD_FILE: MSMg01no456_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,936,462 - 139,936,693)(139,785,617 - 139,785,827)
sequence
NCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXATACAAAAGAGGATCCGC
NGGAATCTCTTTCCCGAGATCTATTTGGCCAGCCCAGCACCAGCGGCCAG
AGTTCGGCCGCACGTGCCCACGCCACCAGGTGTTGCCCGGGCAACTGACT
GCGCTCTCAGCTCAGAGAGATGACGCCAATATCCTGCGCCAGGGCTGCGC
CCTCCCATGTGGCGGCCATTGGCTGGCTGGAAGACGGACGCCTTCCCGGT
CCAATGGATAGCGCTGATCTTCTGAGGGCGGGACGGCGCGGAACCTGCTG
AGCTGGTGGTGTTTTTTCGTGGCAGAGGTGTGCGAGAGTGGGAGCTGCAG
GTGCGTGCTGGTTAGGGTGGGGTGACGGGGGGTTGCCCTACCCCTCCTTC
CAAACGTGTGCCGTCCTCCCTTTTTTCTCTCCCCTCTTCCCTCTCTTTTT
CCCTCTTCCCCTACATCGCGATTTATTTGTTTTCCGCTTTCTCTCACCCA
TTTTTATGGTTGCTCCCTCCCTATTCTATTATTGTTCCGCCTTTGGTGCT
TCGCCGTTCATGTTGTCTGCGTCATCTACCCTACCGTAGCCTATCCCTTT
TGTCTACTCGTTTCTTTTTTCCTCTCTCTACCCTTGCCCTTGCCTGTCTT
TCCGCGTTTCCAATCGTCTACCTCTTTGTGCCGATCTCGCCCCCCCCGCC
GTTCGATACTCCCGTGAGGTATGTCATGACGCTCCGACTTCTTCCTACTT
GTTTGCCTCTTCTTCCTCGATCCTCTCTCCCGCGCTCTTGCCTTTTCTCT

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTGACAGAATATGGCTGTAGATTCC
TTTGCCCTTCTAAGTGCTGATTCATAGCTGGGATTCTGGCCTGATAGCTG
GACTGCAGCCCTCAGCGGGCCAAGGGTAGCAGGAGTGGGCAGCTCAAGAC
TGGAGGCTGGAGTTCTGTTTTACCAATGCATCAGGCGTTCTGGGTGCTGG
GGATTTGAACTCAGGTCCTCATGCCTGCATATACTTGTGGTAGTTAATTT
TGATTTCCAACTTGAGTTTGTTACTTGCAAAGCCCACTTTGGTGTGTGTG
CGTATGTCTACGTCAGCATCGTTAGGATCTTAAGGGCTCTAATCCAGGCC
AGTGATTCTTAATTCCCTGTTCCTTTCTTAACATGATACCTCTACTGTTA
CGCGTTTATGAGTATTTCTATAAATTCCCGTTTTTTTGTAAATCATTTTC
CCTCCCCCGTCCTCCTTTTTTCACCTTTTCCATATCTGTACCCTTCCTTC
GTTTTTCCCCTCTTCCTCTTGTCCCCCTTCCCTTCTCCCCTTTTTTATCA
TTCTTCCCCTCTTCTCTACTATCTTTCTCTCTATTCTTGTTCTCTTTACC
CACGCACCACCCCTATTTTTTCATTTTCCCTTACCTTTCTTTCCTCTACA
TTATTATATTTACCCTGTTTGCTCTCTCCTACTCTTACCATTCCCCCACT
CCTCTATTATATCTTCCTTCTTTTTTTCCTTCCTCCTTCTCCCTTTTTCT
CTTTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_p06.b1 MSMg01no456_p06.b1 CHROMAT_FILE:
MSMg01no456_p06.b1 PHD_FILE: MSMg01no456_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:58 2005
         (234 letters)



>mm_chr5_139936261_139936894
          Length = 634

 Score =  410 bits (212), Expect = e-119
 Identities = 227/232 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   cagcccagcaccagcggccagagttcggccgcacgtgcccacgccaccaggtgttgcccg 61
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 433 cagcccagcaccagcggccagaattcggccgcacgtgcccacgccaccaggtgttgccct 374

                                                                       
Query: 62  ggcaactgactgcgctctcagctcagagagatgacgccaatatcctgcgccagggctgcg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcaactgactgcgctctcagctcagagagatgacgccaatatcctgcgccagggctgcg 314

                                                                       
Query: 122 ccctcccatgtggcggccattggctggctggaagacggacgccttcccggtccaatggat 181
           |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 313 ccctcccatgcggcggccattggctggctggaagatggacgccttcccgatccaatggat 254

                                                               
Query: 182 agcgctgatcttctgagggcgggacggcgcggaacctgctgagctggtggtg 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agcgctgatcttctgagggcgggacggcgcggaacctgctgagctggtggtg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no456_p06.g1 MSMg01no456_p06.g1 CHROMAT_FILE:
MSMg01no456_p06.g1 PHD_FILE: MSMg01no456_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:58 2005
         (211 letters)



>mm_chr5_139785417_139786027
          Length = 611

 Score =  385 bits (199), Expect = e-111
 Identities = 208/211 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgacagaatatggctgtagattcctttgcccttctaagtgctgattcatagctggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgacagaatatggctgtagattcctttgcccttctaagtgctgattcatagctggga 260

                                                                       
Query: 61  ttctggcctgatagctggactgcagccctcagcgggccaagggtagcaggagtgggcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctggcctgatagctggactgcagccctcagcgggccaagggtagcaggagtgggcagc 320

                                                                       
Query: 121 tcaagactggaggctggagttctgttttaccaatgcatcaggcgttctgggtgctgggga 180
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 321 tcaagactggaggctggatttctgtttcaccaatgcatcaggcgttctgggtgctcggga 380

                                          
Query: 181 tttgaactcaggtcctcatgcctgcatatac 211
           |||||||||||||||||||||||||||||||
Sbjct: 381 tttgaactcaggtcctcatgcctgcatatac 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)