BAC Information

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BAC

Clone NameMSMg01-457A16
Chromosome5 (Build37)
Map Location 3,722,547 - 3,722,944
singlet/doubletsinglet
Overlap geneAnkib1
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik
Downstream geneKrit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457A16.T7 (MSMg01no457_a16.b1)MSMg01-457A16.TJ (MSMg01no457_a16.g1)
ACCAG543202AG543203
length787758
length of high quality
(start - end)
480 (47 - 526)398 (91 - 488)
definitionCHROMAT_FILE: MSMg01no457_a16.b1 PHD_FILE: MSMg01no457_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:05 2005CHROMAT_FILE: MSMg01no457_a16.g1 PHD_FILE: MSMg01no457_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAAATGCTTACAACCACAGGCAAAAGTATAGCACCCTCATGGT
AGAGCCATAAGCTCCCTTGGTGAGGATACTAGCTAGTTCTATGTCAACTT
CACACAAGATAGTCAGCAGAGAAGAGAGAGCTTCATTTGAGAAAAATACC
TCAGTAAGACCTGACTGGATGGTGCCATTCCTGGGCTGGAGTTCCTAGCT
CCTATAAGAAAGCAAGTTGATTGTCCATCCTTTCGTCACAGCTCCAAACA
TTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGGACC
ATCTAGAGACTACCATATCCGGGGATCCATCCCATAATCAGCTTCCAAAC
GCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATA
GAGCTCTCTCTTGTGAGACTAGGCCAGTGCCTAGCAAACACAGAAGTGGA
TGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCT
AGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCCAACCTATAGGTGGGAC
AACATTATGAACTAACCAGGTACCCGGGAGTTCCTGAATCTAAGCTGGGT
ATGGATCCAAAGGATGGGCCAATCCGGCCCTCACTGGGAAAGAAAAGGCC
CCTTGGGACTTTGCTAAATTTTTTATGGTCCCCCTGGGTGGGGATAAAGG
CCAGGGGCTTCCTTTGTGGGGGTCCGGGCCTCTAATG
NTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTCTGGC
TTCATTTCGGTTATCTTTTGTAACCAGTTTTTCCATGTTTGGCAGTCACA
AGGCTCATGTGCTTCACCAAGGCACTCCCTAAGAGACAAAACAGAGAAGT
CACTGAAAAATACTCCTCATCACTATGTGGATAAAAAAATGGATGGTAAA
CACGCATCCAATTGAAAAAATTTTAAAAATTAAGGTACAAATTTGATATG
AAGCATTTCAAAAGAGATTTTGAAAATGAGAGTCCAAAGAGAACTTAAAA
ACTGGAATCTTTGGGCACTACTGATGGAAATGTTAATGTTGATGCAGCTG
TCTGAAGAGCAGGTTGGTGGTTTTTTATAAAGTGAAAGAGAATTATCATC
CAACAATAATTTCACGTTAGGTACAGTATTACTACTTATTTCTTCACTGT
AACAAAGCAACACCAGGACAGAAACACCTCAGTGAAAGGTAGGTTTAAAC
CTGGGATATTGGTTTAACAGATATTGCTCCTTCCCTCGGGGGAAACTTTT
GTAGCTTTTTCCCCCCTTTTTTCCCCAATACCACTTTTTTCCCCTGGTTG
TGCCCCTTTATTAAAGTTCTTTTATTGTGTCTATTTATGTTACTGTTTTG
TCTAATTTTTCCCCTCCTTTTGAACCCTTTTTTCTCTTCTCAATTTTATC
CCTTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_a16.g1 MSMg01no457_a16.g1 CHROMAT_FILE:
MSMg01no457_a16.g1 PHD_FILE: MSMg01no457_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:05 2005
         (398 letters)



>mm_chr5_3722347_3723144
          Length = 798

 Score =  770 bits (398), Expect = 0.0
 Identities = 398/398 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttctggcttcatttcggttatcttttgtaaccagtttttccatgtttggcagtcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttctggcttcatttcggttatcttttgtaaccagtttttccatgtttggcagtcaca 260

                                                                       
Query: 61  aggctcatgtgcttcaccaaggcactccctaagagacaaaacagagaagtcactgaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctcatgtgcttcaccaaggcactccctaagagacaaaacagagaagtcactgaaaaa 320

                                                                       
Query: 121 tactcctcatcactatgtggataaaaaaatggatggtaaacacgcatccaattgaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactcctcatcactatgtggataaaaaaatggatggtaaacacgcatccaattgaaaaaa 380

                                                                       
Query: 181 ttttaaaaattaaggtacaaatttgatatgaagcatttcaaaagagattttgaaaatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttaaaaattaaggtacaaatttgatatgaagcatttcaaaagagattttgaaaatgag 440

                                                                       
Query: 241 agtccaaagagaacttaaaaactggaatctttgggcactactgatggaaatgttaatgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtccaaagagaacttaaaaactggaatctttgggcactactgatggaaatgttaatgtt 500

                                                                       
Query: 301 gatgcagctgtctgaagagcaggttggtggttttttataaagtgaaagagaattatcatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgcagctgtctgaagagcaggttggtggttttttataaagtgaaagagaattatcatc 560

                                                 
Query: 361 caacaataatttcacgttaggtacagtattactactta 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caacaataatttcacgttaggtacagtattactactta 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)