Query= MSMg01no457_b24.b1 MSMg01no457_b24.b1 CHROMAT_FILE:
MSMg01no457_b24.b1 PHD_FILE: MSMg01no457_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:12 2005
(434 letters)
>mm_chr5_79529936_79530770
Length = 835
Score = 650 bits (336), Expect = 0.0
Identities = 411/440 (93%), Gaps = 10/440 (2%)
Strand = Plus / Minus
Query: 5 gaattcttcctactttcaactattgatattgaaatattttactcaatctattaagttcct 64
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaattcttcctacagtcaattattgatattgaaatattttactcaatctattaagttcct 464
Query: 65 agggcctgcattctgggggactgacatcaattttggtaattctgtgtattatatattctg 124
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 463 agggcctggattctgggggactgacatcaattttggtaattctgtgtattatatcttctg 404
Query: 125 atcttttcttgatatgactattaatatacattttatgaattaaacataaattacgtctta 184
||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||
Sbjct: 403 atcttttcttggtatgactatgaatatacattttatgaattaaacttaaattaagtctta 344
Query: 185 ggatttagggaaatctgagacactttaaaaaaactatttccttcaaatcaatataggtat 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 343 ggatttagggaaatctgagacactttaaaaaaactatttccttcaaatcaatatagacat 284
Query: 245 gattatactttgaaatggacatagtactaccggagttgtttaaggtttatggctgtaa-t 303
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 283 gattatgctttgagatggacatagtactaccggagttgtttaaggtttatggctgtaatt 224
Query: 304 taaagttccattaaaaatacgtttttgttgttgttg------gttt-ttttttgtttttt 356
||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||
Sbjct: 223 taaagttccattaaaaatatgtttttgttgttgttgttttttgtttgttttttttttttt 164
Query: 357 tttgttttgttttg--tttttggagactgggattaaatatgtgtgtcaccactccaggct 414
||| |||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 163 tttttttttttttggttttttggagactgggattaaagatgtgtgccaccactccaggct 104
Query: 415 aaaagtatctttttaaaaag 434
||||||||||||||||||||
Sbjct: 103 aaaagtatctttttaaaaag 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 835
Length adjustment: 9
Effective length of query: 425
Effective length of database: 826
Effective search space: 351050
Effective search space used: 351050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no457_b24.g1 MSMg01no457_b24.g1 CHROMAT_FILE:
MSMg01no457_b24.g1 PHD_FILE: MSMg01no457_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:12 2005
(373 letters)
>mm_chr5_79332125_79332897
Length = 773
Score = 369 bits (191), Expect = e-106
Identities = 367/527 (69%), Gaps = 154/527 (29%)
Strand = Plus / Plus
Query: 1 actgctgtgtagatatgaataagtgattgtgggtttataagtccccagctcctcagcact 60
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 47 actgctgtgtagatatgaataagtgattgtgagtttatatgtccccagctcctcagcact 106
Query: 61 tgtcaccatcacctcaagctaaggtggctgccactaagcagataaactgtaatttctgtc 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 107 tgtcaccatcacctcaagctaaggtggctgccactaagcagataaactataatttctttc 166
Query: 121 attttgcagttagggcagctgctgagaagaggaagaaggcaagatcagggagaacacata 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 attttgtagttagggcagctgctgagaagaggaagaaggcaagatcagggagaacacata 226
Query: 181 atggtcttcaac------------------------------------------------ 192
||||||||||||
Sbjct: 227 atggtcttcaacgacttgtccctcctagcataagtggtatttaaaattattttatgagag 286
Query: 193 ----------------------------------------aactt--------------- 197
|||||
Sbjct: 287 agagagagagagagagagagaatgaatatactcatttattaacttgtatggggaaaggca 346
Query: 198 ---------------------------------------------------aatcctcaa 206
|||||||||
Sbjct: 347 agaataaagaagaccccctaatcaatgcatgaaataataaaatggtagtgaaatcctcaa 406
Query: 207 agttatatgagaaacttatatatagtttatggaatttgtggttaaaataacacattaggg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agttatatgagaaacttatatatagtttatggaatttgtggttaaaataacacattaggg 466
Query: 267 atttttggagataattattctgcacagatctggttagttctatttaaatttcagtaatta 326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atttttggagataattattctgcacagatctggttagttctatttaaatttcagtaattc 526
Query: 327 tatggtaaatagtaaataattattttgagatgttaaataaatatgta 373
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tatggtaaatagtaaataattattttgagatgttaaataaatatgta 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
