BAC Information

Click to search

BAC

Clone NameMSMg01-457L24
Chromosome5 (Build37)
Map Location 63,738,613 - 63,738,907
singlet/doubletsinglet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457L24.T7 (MSMg01no457_l24.b1)MSMg01-457L24.TJ (MSMg01no457_l24.g1)
ACCAG543742AG543743
length769769
length of high quality
(start - end)
438 (50 - 487)347 (85 - 431)
definitionCHROMAT_FILE: MSMg01no457_l24.b1 PHD_FILE: MSMg01no457_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:05 2005CHROMAT_FILE: MSMg01no457_l24.g1 PHD_FILE: MSMg01no457_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTATCTCTGAGCCCCATTTTTTAATGGGGTTATTGG
ATTTTCTGGAGTCCACCTTCTTGATTTATTTATATATATTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATATGTTGGTGG
TCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAATT
TTATGAGGTACCATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCT
GTTCTATTCAGGAATTTTCCCCCTGTATTCATATCTTCAAGGCTTTTCCT
CACTTTCTCCTCTATAAGTTTCACTGTGTCTGGTTTTATGTGGAGTTTCT
TGGATTTGACCTTAGTACAAGGAGGTAGGAATGGATCAATTCGTATTCTT
CTATATGATAATCGCCAGTTGTGCCAGCACCATTTGTTGGAAATGCTGTC
TTTTTTCCCTTGGATGGTTTTAGTTCTCTTGTCTAATATTAAGTGACCTT
ATGTGTGTGGGTTCCTTTCTGAGCTTTCCATTTAATTCCTTGTGGCAACT
GTGTCCGCTCTTATCCTCTTTCAATGTGCTTTTGTTCCCATTTGTTCTGT
TTTACCTCTTTTTTTTTTGTCCTGGTCTATTTTTTTCCCATCTCTCTTTT
TTTTCTTTACAACAACAACTCTGTTATTACATACCTGCATTTTCTGATTC
TCCTCCTCTTCATTTTTCC
NNTTTTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTCTAGTTATAAA
ATGCCTTGAAAAACCAAAACCAAAACAACAACAACAGCAACAACAAAAAA
CAAATAAAATGTTGTGAAACTTTTCTATTGGAACATTGTGTCTGAGAAAA
CTGAATCATTGTTCCTTTTGTGTGGCCACTCCTGTGTGATTCCAGAATTA
ACTACATATATTTATTTTGAGGTGAGAGTAGTGTTTTTGCATTGACAAAG
GACATATATAGAGAGATGTTCGATACAGTGGGTGTGTCTCTTACACAAAA
AAACAAGACTAATTCTACAGCCTCTGAATAATGGTCCAACTGGACACATA
AGAGAATCTGGATGATGCCTCTGTGTTGCACAACCCTAGTCTTGCATCTC
TGGTTCAGACAATGAGAATGTTAATGCCCCCTCCCCATATAATCTTTGTC
TCTCTTCAAGCATTATATAAATAAATCTTTGGTTTCCCCTTATTTGGGCC
GGGTTTGTTTTTGGATTTATATTCTCCCCCTTCGATCATTTTTCTCCTTC
TTATTTTTTCTTTTCTTTTAAATCCTCTTTTACTCTTTTATTTTTTGCTG
CCTTTATCTCCCTCTTACCTCTTAACCGCTTCTCATTTTTATCCTTTCAC
CCCCTTACTCTTCACTTCCACCATTTTCCCCTTCTCCTTTTTTTCTTTTC
TCTTTGTCGCAGTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_l24.g1 MSMg01no457_l24.g1 CHROMAT_FILE:
MSMg01no457_l24.g1 PHD_FILE: MSMg01no457_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:05 2005
         (347 letters)



>mm_chr5_63738364_63739110
          Length = 747

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%), Gaps = 1/296 (0%)
 Strand = Plus / Plus

                                                                       
Query: 49  aacagcaacaacaaaaaacaaataaaatgttgtgaaacttttctattggaacattgtgtc 108
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aacagcaacaacaaaaa-caaataaaatgttgtgaaacttttctattggaacattgtgtc 308

                                                                       
Query: 109 tgagaaaactgaatcattgttccttttgtgtggccactcctgtgtgattccagaattaac 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgagaaaactgaatcattgttccttttgtgtggccactcctgtgtgattccagaattaac 368

                                                                       
Query: 169 tacatatatttattttgaggtgagagtagtgtttttgcattgacaaaggacatatataga 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tacatatatttattttgaggtgagagtagtgtttttgcattgacaaaggacatatataga 428

                                                                       
Query: 229 gagatgttcgatacagtgggtgtgtctcttacacaaaaaaacaagactaattctacagcc 288
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 429 gagatgttcgatacagtgggtgtgtcacttacacaaaaaaacaagactaattctacagcc 488

                                                                   
Query: 289 tctgaataatggtccaactggacacataagagaatctggatgatgcctctgtgttg 344
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 489 tctgaataatggtccaactggacacataagagaatctggatgatgcctttgtgttg 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)