BAC Information

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BAC

Clone NameMSMg01-457M07
Chromosome5 (Build37)
Map Location 8,424,739 - 8,424,977
singlet/doubletsinglet
Overlap geneSlc25a40
Upstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4
Downstream geneGm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457M07.T7 (MSMg01no457_m07.b1)MSMg01-457M07.TJ (MSMg01no457_m07.g1)
ACCAG543756AG543757
length781748
length of high quality
(start - end)
240 (84 - 323)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no457_m07.b1 PHD_FILE: MSMg01no457_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:06 2005CHROMAT_FILE: MSMg01no457_m07.g1 PHD_FILE: MSMg01no457_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGCAGC
CGCGGAATTCAAGGCCATTTCAGACAAGGCAGNAAGCCCCAGGCTAGGTT
GGACTACAAGGGAGACTGTCTCATAACGAGAAACAAGAACATAAACCACA
TTCATTTAGTCCTGATTACTGACAGGATGTGTAGAGACTTCTGTCTTCAT
ACAACCAAACCCTTCTTCCTGTGGCTGCTGTAAAACTTGGGTTCCATGGG
ATACTATGAGTTGACTGAAAACAAAAAAAACAAAAAAACACTAGTACCTA
GGTGGTGAGTAGATGTTTTGCTTATTCTTATTTTGGAATTATACCTTACA
TGACACATAATGAGTCTAACACGGTTCCAACTCTTTGATTGTCTTATCTC
AGAAGAAATATAAATCACCTTTCACAAGAGCATAAAACAACTTCCAGTTT
TATTTTCCAAAGAAACATGATTACATCTTTTCCAAATTCTGAATACTTCA
AAGAGAGATAGAGATATATATAATATTGAGGATGAAAGACATTAATAACA
TTAATACCACCCCCCTTTTCCTTTCGGCCACCTCCTTCTTCTTCATCTAT
TTTTTCTTCTTCCGTGTGCCTCCACCCATATAATGCTCTGGTTCCACAAT
GGTATCCTAACTAACTTATCCTTTAGATTTATTTTTTTCATAATTGGTAA
TCTTTCTCTCCCATCTTCCCTTTCCTTTACTATACTCTTTTACATGCTTC
ATGTGTTTTGTGCCTCTATTTTCTCTCATTN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAG
ATCAGTCTGGCGGTTCCTCATATAATTGTTTATAGNACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGA
TGTGGTACATCTACTCAATGGAGTACTACTCAGCTATTAAATAGAATGTA
TTTATGAAACTCCTGGCCAATTGGATGTAACTGTTATGTTTCTTCCTGGA
TGAGTTTAAAATTTTTTTAGGGATCTCCACATTTTTTCTCCATGGTTAAT
TGTATATCACTTTTTTTTTTTTTTTTACCCCATTATAAAGAAAATGCTTG
CACAATATATGAGCAACCTTGAATATGTTACCTTTTTTTGTTTTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_m07.b1 MSMg01no457_m07.b1 CHROMAT_FILE:
MSMg01no457_m07.b1 PHD_FILE: MSMg01no457_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:06 2005
         (240 letters)



>mm_chr5_8424539_8425177
          Length = 639

 Score =  410 bits (212), Expect = e-119
 Identities = 233/240 (97%), Gaps = 1/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagccccaggctaggttggactacaagggagactgtctcataacgagaaacaagaacata 60
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 439 aagccccaggctaggttggactacaagggagactgtctcaaaacaagaaacaagaacata 380

                                                                       
Query: 61  aaccacattcatttagtcctgattactgacaggatgtgtagagacttctgtcttcataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaccacattcatttagtcctgattactgacaggatgtgtagagacttctgtcttcataca 320

                                                                       
Query: 121 accaaacccttcttcctgtggctgctgtaaaacttgggttccatgggatactatgagttg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 319 accaaactcttcttcctgtggctgctgtaaaacttgggttccatggggtactaggagttg 260

                                                                       
Query: 181 actgaaaacaaaaaaaacaaaaaaacactagtacctaggtggtgagtagatgttttgctt 240
           ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 actaaaaacaaaaaaa-caaaaaaacactagtacctaggtggtgagtagatgttttgctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 639
Length adjustment: 9
Effective length of query: 231
Effective length of database: 630
Effective search space:   145530
Effective search space used:   145530
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)