Query= MSMg01no458_f03.b1 MSMg01no458_f03.b1 CHROMAT_FILE:
MSMg01no458_f03.b1 PHD_FILE: MSMg01no458_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:53 2005
(247 letters)
>mm_chr5_56718309_56718954
Length = 646
Score = 389 bits (201), Expect = e-112
Identities = 213/217 (98%), Gaps = 1/217 (0%)
Strand = Plus / Plus
Query: 5 gaattctaaaaggtgctcgaaagatacaaatacatttgtttcattatatcaaatataatt 64
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattctaaaaggtgct-gaaagatacaaatacatttatttcattatatcaaatataatt 263
Query: 65 atgtagaaaactgtaattatatagaaaaacaattatattataaagtaaaaatgaagcacc 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgtagaaaactgtaattatatagaaaaacaattatattataaagtaaaaatgaagcact 323
Query: 125 gaattcattttttattttatcttatatatattcattgtgtatattctgaattgcatagga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaattcattttttattttatcttatatatattcattgtgtatattctgaattgcatagga 383
Query: 185 acattttaataaaagtgcatatatatatatatatata 221
||||||||||||||||| |||||||||||||||||||
Sbjct: 384 acattttaataaaagtgtatatatatatatatatata 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space: 151606
Effective search space used: 151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no458_f03.g1 MSMg01no458_f03.g1 CHROMAT_FILE:
MSMg01no458_f03.g1 PHD_FILE: MSMg01no458_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:53 2005
(562 letters)
>mm_chr5_56835305_56836264
Length = 960
Score = 946 bits (489), Expect = 0.0
Identities = 548/584 (93%), Gaps = 29/584 (4%)
Strand = Plus / Minus
Query: 1 catggngaagaaaggaaaagggacaaaaacagtatgaaaataggtttctagattattata 60
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 649 catgg-gaagaaaggaaaagggacaaaaacagtttgaaaataggtttctagattattata 591
Query: 61 taggagacaataaagatgtatgtcttggtttccatctcaactcctttaaaatacacaaat 120
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 590 taggagacaataaagatgcatgtcttggtttccatctcaactcc-ttaaaatacacaaat 532
Query: 121 catataaagtaactgca----------------------ac---aatgtattctctcgat 155
||||||||||||||||| || ||||||||||||||||
Sbjct: 531 catataaagtaactgcaatatgatataatatgatatgatacaataatgtattctctcgat 472
Query: 156 ggttgtaagtgtgcatgtaacatctatattagtaatatcatgtaatattattttggtaga 215
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 471 ggttgtaagtgtgcatgtaacatctatattagtaatatcatgtaatattattttggaaga 412
Query: 216 tgatgaggtctagaggcttagtgtcttagagcatagttatacccagagacattcactgat 275
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 411 tgatgaggtctagaggcttagtgtcttagagc--agtcatacccagagacattcactgat 354
Query: 276 gtattgtaatgacgtttttattttttaatttatttaatttactattttgagttttatgca 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gtattgtaatgacgtttttattttttaatttatttaatttactattttgagttttatgca 294
Query: 336 tggatattctgttaatataattctgctgtctcactctctcactccaacttcttccaattc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tggatattctgttaatataattctgctgtctcactctctcactccaacttcttccaattc 234
Query: 396 cttcccacttctttgtatatgaaaggcctcttaatctgtaattgtattacttatacacaa 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 cttcccacttctttgtatatgaaaggcctcttaatctgtaattgtattacttatacacaa 174
Query: 456 ggaccacatgtgtgtaaccacgtatgtgtgaatgttatatacaatatatgggtgtgttgt 515
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 173 ggaccacatgtgtgtaaccacgtgtgtgtgaatgttatatacaatatatgggtgtgttgt 114
Query: 516 gtgtgtgtttgcgtgatgtatgtgcggntgtgtatgtgtgtgtg 559
||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 113 gtgtgtgtttgtgtgatgtatgtgcgggtgtgtatgtgtgtgtg 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 960
Length adjustment: 10
Effective length of query: 552
Effective length of database: 950
Effective search space: 524400
Effective search space used: 524400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
