BAC Information

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BAC

Clone NameMSMg01-459A19
Chromosome5 (Build37)
Map Location 103,333,798 - 103,334,209
singlet/doubletsinglet
Overlap genenone
Upstream geneWdfy3, EG666515, EG666527, LOC625780, Arhgap24
Downstream geneMapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459A19.T7 (MSMg01no459_a19.b1)MSMg01-459A19.TJ (MSMg01no459_a19.g1)
ACCAG544736AG544737
length795778
length of high quality
(start - end)
39 (68 - 106)414 (72 - 485)
definitionCHROMAT_FILE: MSMg01no459_a19.b1 PHD_FILE: MSMg01no459_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:49 2005CHROMAT_FILE: MSMg01no459_a19.g1 PHD_FILE: MSMg01no459_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGNAT
TCCCGANGTCCACTTTGACTTGCCTTGCTTCTTAAGCCAGTTTGTCTAAA
TCCTACGACCTCCTGATCATGGCGATAATGATTTGGATGGTGGAGGTAGT
GATGGTGATGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNC
CCNNCCCCCCCCCCCCCCCCCCNNCTNNNNCNCNNCCCNNTCCCCTCCCC
CCCCTCCCCCCNNTNNTTTCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCT
TCTTTTTTTTTCCCTCTTCCCCCTCCCCCCCCCTTTCTTCTCTCCCCCCC
CCCCCNCCNCCCCCCCCCCCCTTTTCTCCCCCCCCCTCCCCCCCCCCCCC
CCCCCCCCCTCCCCCCCCCTTCCCCCTTCCCCCTCTTCCCCCCCCCCCCC
TTTTTTCCCNCTCCCCCCCCCCCCCCCTCCCCTCTCCCCCCCCCCCCCCC
CCCCCCTTCTCCTCCCCCCCTCCCCCCCCNTCCCCCCCTCCCCCCCCTCT
CCCCCTTCCCCCCCCCCCCCTCCCTCTCCTTCCCTCCCCCCCCCTTTCCC
CCCCCTCTTCCCCCCCTCCCCCCTCTCCCCCCCCCTCCCTTCCCCCCCCC
CCCCCCCCTCTTTCCCCCCCCCCTCTCTCCCCCCTTCTTCTCCCCCCCTC
ACCCCCTCCCCCCCCCTCCCTCTCCCCCCTCTCTCCCTCCCCCCCCCCCT
NTTCCCCCCCCCCTTCCCCCCCCCCCCCCCCCCTCCCCCCCCCCC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGAAAAGAAAGACAATGGAAGAAAGCCA
TGCATCATAGGCTATGGTAAAAATCCAGAAAGAAATGATGGGGTTTTAAC
CAAGGAGTAGAGAATCTGAGAAGAATGAAGAGTTTGGCCAAGGTATAATT
AGGAATGAACAGCAGCCAGTGGCACACACATGAAATTTCATTTATTTGGG
GACAAGCTGGTGGATTACAAGTTTAAGGTTAGCCTAGGCAACTTAAGTCA
GACTTTGTCTCCAATTAAAAAGGGAAAGAGGTATGCCTTACCTAGTAGGA
GGCTTTAGGTTCAGTCTTCAATAAGTATAAATATTACTGAATGGATTAAA
AATAGACAAAAAGGATAGCTTGTGAAAGTGGAGCTGAAAACATTTTCTGG
TGAAATGATAGTATGATATGTAGATGACTATTANAAACCACTCCGGGATT
TTTCTTTTTACATAAGCGATAATGGATGCTTGCTATCGGNGACTGACAAC
CGCGGACCAAATAAAAACCTGGGAGAAGCTGCCCTTGTGTTTTTTGAAAT
TCCCCCTTGGTTTTAAAATCTATAAGGACTCGTTCGTACATAAGGTAGGA
AAAGCCCAAATTCCTTTTTGTTTTCCTCAAATTCTTGTATGCCAGTATCG
TGTTTTTTATTCGGTTTCTTCCTTCCGCTAACCTTGTTCTTTTTTTTTGT
TCCCTTTCTCTCCTTTTCTTTCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_a19.g1 MSMg01no459_a19.g1 CHROMAT_FILE:
MSMg01no459_a19.g1 PHD_FILE: MSMg01no459_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:49 2005
         (414 letters)



>mm_chr5_103333598_103334411
          Length = 814

 Score =  774 bits (400), Expect = 0.0
 Identities = 409/412 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaaaagaaagacaatggaagaaagccatgcatcataggctatggtaaaaatccagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttgaaaagaaagacaatggaagaaagccatgcatcataggctatggtaaaaatccagaaa 553

                                                                       
Query: 61  gaaatgatggggttttaaccaaggagtagagaatctgagaagaatgaagagtttggccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gaaatgatggggttttaaccaaggagtagagaatctgagaagaatgaagagtttggccaa 493

                                                                       
Query: 121 ggtataattaggaatgaacagcagccagtggcacacacatgaaatttcatttatttgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggtataattaggaatgaacagcagccagtggcacacacatgaaatttcatttatttgggg 433

                                                                       
Query: 181 acaagctggtggattacaagtttaaggttagcctaggcaacttaagtcagactttgtctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 acaagctggtggattacaagtttaaggttagcctaggcaacttaagtcagactttgtctc 373

                                                                       
Query: 241 caattaaaaagggaaagaggtatgccttacctagtaggaggctttaggttcagtcttcaa 300
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 372 caattaaacagggaaagaggtatgccttacctagtaggaggctttaggttcaatcttcaa 313

                                                                       
Query: 301 taagtataaatattactgaatggattaaaaatagacaaaaaggatagcttgtgaaagtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 taagtataaatattactgaatggattaaaaatagacaaaaaggatagcttgtgaaagtgg 253

                                                               
Query: 361 agctgaaaacattttctggtgaaatgatagtatgatatgtagatgactatta 412
           |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 252 agctgaaaacattttctggtgaaatgatagtatgatatatagatgactatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)