BAC Information

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BAC

Clone NameMSMg01-461F12
Chromosome5 (Build37)
Map Location 99,313,696 - 99,313,936
singlet/doubletsinglet
Overlap genenone
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3
Downstream genePrkg2, LOC100041680, Rasgef1b, A930011G23Rik, LOC100040738, LOC666364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461F12.T7 (MSMg01no461_f12.b1)MSMg01-461F12.TJ (MSMg01no461_f12.g1)
ACCAG546489AG546490
length744804
length of high quality
(start - end)
241 (76 - 316)67 (98 - 164)
definitionCHROMAT_FILE: MSMg01no461_f12.b1 PHD_FILE: MSMg01no461_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:55 2005CHROMAT_FILE: MSMg01no461_f12.g1 PHD_FILE: MSMg01no461_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTTTCTTTATTTGCGGCCGCTAATAGNTCACTATTTCAAGACAACCG
CGGAATTCCAGGCCTCCCGAGACTAGAGGCAAGTAGGGATCTTCTTAAAC
CAGTTCCTTGATCTCAGAGAGCTTCATTTATCTTACATATGAATGAAGTA
ATAAAGCCTTTGCCAATGGAAGGTTAGAATCAAGATTATTAGTTTAAGGC
CGGGCGTGGTGACTCACGCCTTTAGGCAGAGGCAGGCATATTTCTGAGTT
TGAGGACAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCCACAT
AGAGAAACCCTGTCTCTAATAATAAAACAAAAACAAAAAGGTCATTAGTT
TACAAAGAACTTGACAAACTAAATATTGAGAGACAGACAGACATGGAGGG
AGGGAGGGAAGGGGGGAGAGATTTTCTTTTTTCCTCCTTCTTTTTTTTTC
TTCTCCCTCCTCTTCTCTTTCTTCCTTTTTTTCCCTTTTTCTCCTTTTTT
TTTTTTCCCCCCTCTTTTCTCTTTTTCTCTTTTCTCTCTCTCCTTTTTCC
CCTTTCTTCCCCCCCCTCCTCTTCTCTATTTCCGTTGTTCACTCACGCAC
TATTTCCCTATCTTTTTCCGCATTATATACTCTTCTTTTCTCTCTCTTTT
CTTTTTTTTTTCGCTCCCCCCTTTACTCCCTTCTCCTTTCCTTTTTTCTT
TATTTTATCTCTACTTCTTTCTTCCCCCCTCCCTCTCTTTCTTC
TCCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATCTCCTTATGTTTGCTCTTTAGTTT
TGTTCTTTAGGATATGTGTGAGTAGAGGAGAATGGCCCTGGCCTTTGGAA
AGGACCTTCTTTCTTCCCTAGCTGTAGCCAGAGAACAGGGTTAGTGTGCT
CAGATACTATGTGACTCTAATTCTAGATTTCTTATCTATAACTTAGATGG
TTACCACGATGATATAATTATAGTCACCAAAAGTAGCTTGTTTCGAACAG
ATGTCTAATGTTTTTCGAGACCCTCCATCTTGCCTTCTGCCTGGATGCTT
CCCAGTCAGAGTTTCTCAAACACTATATTTTTGACAATTCTTAAATCATC
AGTCTCATCCAATACTTCTTGTACTATATCATGCACACTATAAGTTTTCC
TTCCTTGGACCTTTCTGTTCCGTTACTCCTCATATATTTCTGGTCTCCCT
CGTCCGCTCTCCCATCCTTCGCCTTTATGTTCTCTCCCTTTCCTTCCTAC
CTCTGCCCCTTTTTTTGTTTCCTGTCTGTCTTCCCCCATCTCCATTTCTC
TCCTTCTCCCCCCCTTTTTTTTTCCCCCACAGCCCTCTCCATTTTTTCCT
ACTATCTTCCTTCCCCCCCTTCCCTTTCCCCTCCCTATCACTTTCTTCCC
CCATACCTTTTATTTCCTCCTCCTCCTCTCTATATTCCCATTTTTACACT
TTCTTCTCCTTTTCACTTTCCTCCTCTTACCGTCCCCTTCTGTGTTCTCT
CCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_f12.b1 MSMg01no461_f12.b1 CHROMAT_FILE:
MSMg01no461_f12.b1 PHD_FILE: MSMg01no461_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:55 2005
         (241 letters)



>mm_chr5_99313496_99314136
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggcaagtagggatcttcttaaaccagttccttgatctcagagagcttcatttatctta 60
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggcaagtagggatcttcttaagcaagttccttgatctcagagagcttcatttatctta 260

                                                                       
Query: 61  catatgaatgaagtaataaagcctttgccaatggaaggttagaatcaagattattagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catatgaatgaagtaataaagcctttgccaatggaaggttagaatcaagattattagttt 320

                                                                       
Query: 121 aaggccgggcgtggtgactcacgcctttaggcagaggcaggcatatttctgagtttgagg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 aaggccgggcgtggtgactcacgcctttaggcagaggcaggcagatttctgagtttgagg 380

                                                                       
Query: 181 acagcctggtctacagagtgagttccaggacagccagggccacatagagaaaccctgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagcctggtctacagagtgagttccaggacagccagggccacatagagaaaccctgtct 440

            
Query: 241 c 241
           |
Sbjct: 441 c 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)