BAC Information

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BAC

Clone NameMSMg01-462H04
Chromosome5 (Build37)
Map Location 103,477,045 - 103,477,366
singlet/doubletsinglet
Overlap geneMapk10
Upstream geneWdfy3, EG666515, EG666527, LOC625780, Arhgap24
Downstream geneLOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462H04.T7 (MSMg01no462_h04.b1)MSMg01-462H04.TJ (MSMg01no462_h04.g1)
ACCAG547332AG547333
length762777
length of high quality
(start - end)
322 (72 - 393)225 (72 - 296)
definitionCHROMAT_FILE: MSMg01no462_h04.b1 PHD_FILE: MSMg01no462_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:28 2005CHROMAT_FILE: MSMg01no462_h04.g1 PHD_FILE: MSMg01no462_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATAATTGTCGGCGCTAAACGACTCCTATAGTCAGAACACCGCGGAATT
AATGCAGCTTTCCAAAAAAACAAGAAAAATATAGTGCTAATAGTGCATTG
GCACTTTGACCTTCTTGAATGTGTTGGCAATATATAATCAAACAAGTATT
TACATTTTAGAGACTACGAACCCCCAGAAGTATACTGGCATCTGTGGAAT
TTAGAACTTGGAACTGAACTGCTGGTGGGCAAGCTTGACCTACTTGCTTA
ATGTCGCCACTCCTGGTTGTGCGCCCAGCCTTAGGGAATCATTTTTCAGT
AAAACAAAGCCTGTTTTTTTATTTCCATTTCCAATGCCCTCTGCCACCTG
GGAAATATTGCATGGAAAGCACAGAATAATTACAGATGAACACAATTTAG
ACTATAACTGAGTCTGTGTGTTTCATACATCTTTTAGCAAGCATGACTAC
ATATGTCCTGAAATCACGCACAGTTCTAGTGAATTTTATAGTTCAACTAT
TTATCAATATACTCTAGCCATGACTTTGCTCATTCTGATTGAACCCTCCA
TTATAATTAAACTCACAATACTCAGCTTTCATTTATATCCCGCTTATCTT
ATTCCCCTGAATGCTAAATTTTTTACCCCTTGTGCGTCTAGTATACCCTC
GCCTGTTTCTTAACAATGAACCCTCTCATGTATTCTTCATATTTTACCAA
GACTGTAATTTTTATTTCCTTTGCCCCCTTGTTCTCTACGTACTTGTTTA
CTCCATACTCAC
ATGCTATGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTCGCAATCACGCAGTTGAATCCTTCTCAACAGTCTG
TGTTGTGGGAACACTTTATTACCACCGTTCCCCAGCTGAAGAGTTCTGAA
TTCATGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCAT
TACCACTGTTCCCCAGCTGAAGAGTTCTGAATTCACACAGTTGAATCCTT
CTCAACAGTCTGTTTTACGGGAACCTTTATGACCGTGACCCGCAGTTCTG
TTCCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCCCAGG
TTTTCTCGTCCCAGGATTTCTCGTCTCAGGTCTTCTCGTCCTCCCGGGTT
TCGGTACCAACTCTTACTCGCGTTCACGACCGGCCATTTAATGACTCAGC
AAACCGTAATCTTCTGCGGCATAAGCTTTATTGCTTACATCTTCTGGATC
CAGAGATTCTCGATATCATCACTATGTACTTGATCTCTTATCTTTAAGCT
ATATTCTTATTCATAATCTGCTTTACTTTTTTTTTCTACTTTTTTCGACT
TACAGATATAATAAGCTACATCTTTCTTATATAATTTCTTTTAACTTTAC
ATGATTATATTTCTCCTTATTATAGTACAGTTCCCCATTGGCTTTCCCTC
CTCCTCCTTTCAACGTTTAACTCCCCTTCCGTCTCACGTTCCTACTTTAC
TTCCCGTCTTGGCCCGTCCTCTCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_h04.b1 MSMg01no462_h04.b1 CHROMAT_FILE:
MSMg01no462_h04.b1 PHD_FILE: MSMg01no462_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:28 2005
         (322 letters)



>mm_chr5_103476845_103477566
          Length = 722

 Score =  545 bits (282), Expect = e-159
 Identities = 312/322 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaaaatatagtgctaatagtgcattggcactttgaccttcttgaatgtgttggcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaaaatatagtgctaatagtgcattggcactttgaccttcttgaatgtgttggcaat 260

                                                                       
Query: 61  atataatcaaacaagtatttacattttagagactacgaacccccagaagtatactggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atataatcaaacaagtatttacattttagagactacgaacccccagaagtatactggcat 320

                                                                       
Query: 121 ctgtggaatttagaacttggaactgaactgctggtgggcaagcttgacctacttgcttaa 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||
Sbjct: 321 ctgtggaatttagaacttggaactgaactgctggtgggcgagcttgacctacttgcaaaa 380

                                                                       
Query: 181 tgtcgccactcctggttgtgcgcccagccttagggaatcatttttcagtaaaacaaagcc 240
           ||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcgccactcctgactgtgcgcccagacttagggaatcatttttcagtaaaacaaagcc 440

                                                                       
Query: 241 tgtttttttatttccatttccaatgccctctgccacctgggaaatattgcatggaaagca 300
           |||   |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tgtaactttatttccatttccaatgccctctgccacctgggaaatagtgcatggaaagca 500

                                 
Query: 301 cagaataattacagatgaacac 322
           ||||||||||||||||||||||
Sbjct: 501 cagaataattacagatgaacac 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)