BAC Information

Click to search

BAC

Clone NameMSMg01-462L21
Chromosome5 (Build37)
Map Location 60,585,638 - 60,586,001
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041425, LOC546866
Downstream geneCbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462L21.T7 (MSMg01no462_l21.b1)MSMg01-462L21.TJ (MSMg01no462_l21.g1)
ACCAG547558AG547559
length753766
length of high quality
(start - end)		474 (53 - 526)412 (81 - 492)
definitionCHROMAT_FILE: MSMg01no462_l21.b1 PHD_FILE: MSMg01no462_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:51 2005CHROMAT_FILE: MSMg01no462_l21.g1 PHD_FILE: MSMg01no462_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAA
TCCGCGGAATTCTCACCTGATTCCTACCGAATGGCAGAGAAGCACCTGAA
AAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGT
TCCTCAGAAAACTGGATATAGTACTACCGTATGATCCAGCAATACCTCTC
CTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAAC
CCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTAC
ACAATGGAGTACTACTCAGCTATTATAAAGAATGAATTTATGAAAATCCC
TGGCAAATGGATGGACCTGGAGGGGATCATCCTGAGTGAGGAACACATTC
TCAAAGGAATCCCCCAAATGTACTCCCTGAAAGGGGAGATTACCCCAACC
CTAAAATACCCAGAAATAAAAAAAATTTCCTAAACCATGAATTCCCAAAA
ATGAAAACGGAGGTGGAAAAATGCCCCCTCTAAAAGGGAGGAAAAACCCT
TGG

NNNNNNACGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCCTACAGGATGTATCT
GACTCTGCTACTTCTTTGCTGTAATTATTCAATTCTTATATGTACATGTA
TGTGTGTGAACATGTATGTGTAAGCCAGAGAACAGCTTCTATTCTTTCTC
CTGAGAAGCTGTCTACCTTGTGTTGTAAGAAATGATTCTTAGCCGCTCAT
GCCTTTAATCCCAGCACTTAGGAGGCAGAGGCAGGTGGATTTCTGATTTT
GAGGCCAGCCTGATCTTCAGAGTGAGTTCCAGGACAGCCAGGGCTACACA
GAGAAACCCCATCTCAGAAACAAACAAACAAACAAACAAACAAATTATTC
TCTATTGCTCTGAGCTCAGCATTTAGGCTAAATTCACTAGCCAGCAAGGT
CAAGGGGAACATAGTTTCTGCACTATCAGGACTGTATAGACNAGTGTAAG
CCACTCTGCTTGGCTTTATAAATATGAACTATCTCCCACAAAGTCTAGTT
TTCATACTTGTTAAAAAAGGGCTTTATGAGGCTACTTCCCTAGAGTCTAA
GAAAGTCTTGTTAAAGCCCCTTTTTGGGAATGTCNNTTTNNNTNTTTATT
TTTATTTTTTNNCTCANCCCNNCNNNNNNCCCCNNCCCCCGGCCTTTTGC
GGCGCGGGGTGGCCCCNNTCTTTTTTTTTTTTTTTTTATCATAATAAAAG
GGTTTGGGGTGGTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_l21.g1 MSMg01no462_l21.g1 CHROMAT_FILE:
MSMg01no462_l21.g1 PHD_FILE: MSMg01no462_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:51 2005
         (412 letters)



>mm_chr5_60585638_60586449
          Length = 812

 Score =  630 bits (326), Expect = 0.0
 Identities = 347/364 (95%), Gaps = 16/364 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttcctacaggatgtatctgactctgctacttctttgctgtaattattcaattcttata 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 364 tgttcctacaggatgtatctgactctgctacttctttgatgtaattattcaattcttata 305

                                                                       
Query: 61  tgtacatgtatgtgtgtgaacatgtatgtgtaagccagagaacagcttctattctttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgtacatgtatgtgtgtgaacatgtatgtgtaagccagagaacagcttctattctttctc 245

                                                                       
Query: 121 ctgagaagctgtctaccttgtgttgtaagaaatgattcttagccgctcatgcctttaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctgagaagctgtctaccttgtgttgtaagaaatgattcttagccgctcatgcctttaatc 185

                                                                       
Query: 181 ccagcacttaggaggcagaggcaggtggatttctgattttgaggccagcctgatcttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ccagcacttaggaggcagaggcaggtggatttctgattttgaggccagcctgatcttcag 125

                                                                       
Query: 241 agtgagttccaggacagccagggctacacagagaaaccccatctcag------------- 287
           |||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct: 124 agtgagttccaggacagccagggctacacagagaaaccccatctcagaaacaaacaaaca 65

                                                                       
Query: 288 ---aaacaaacaaacaaacaaacaaacaaattattctctattgctctgagctcagcattt 344
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  aacaaacaaacaaacaaacaaacaaacaaattattctctattgctctgagctcagcattt 5

               
Query: 345 aggc 348
           ||||
Sbjct: 4   aggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |