BAC Information

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BAC

Clone NameMSMg01-463N19
Chromosome5 (Build37)
Map Location 56,760,388 - 56,760,899
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349, LOC666455
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463N19.T7 (MSMg01no463_n19.b1)MSMg01-463N19.TJ (MSMg01no463_n19.g1)
ACCAG548414AG548415
length745757
length of high quality
(start - end)		512 (78 - 589)478 (83 - 560)
definitionCHROMAT_FILE: MSMg01no463_n19.b1 PHD_FILE: MSMg01no463_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:26 2005CHROMAT_FILE: MSMg01no463_n19.g1 PHD_FILE: MSMg01no463_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAAATTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGTAATAATTCCGTCACAGGTAAGTTACTAGTTTAG
CTGTTTGGCAAATCAGATCAGTGTCCTGCATTAGGTAGGTAGTATGAAAG
AAACAAAAGAAATACCTCATTTTTAATTTATACCTGGCTTACAGTCTTCT
GAAGGTTAGGCTTAATGAAATAAATAAAATGAGTGGTGAGTTGCCTTAGT
GAGCTCCCTAAGAAGACATTCATGTTGATGTGAGCTCATACCATATTCAC
ATCAAAGCTGACTCATCTAAGAAAATGCATGTTCCCAGCGTGGGCAGCAC
TAATAATCCCAATTCATCCTACTGAATGAAAGTTACTTTCCAAAAATTTA
ATGAAATGATACTTAACTATGTTTTTAAATAATTTCACTTTTGGAATGTG
TTACAAAATCTAAAAGAAGTAATATTTCCCCTAACAATTGCTTACAGTAA
GCAGTATAAAGACAAGATGGTAGACAGATCTTCAAGTCCTGTTTTAAATG
TGTATATTCATTTCAATTACTTTGTATATCAGCATTGTTTTATGAGAAGT
AAATATAATATCTTTACATAAAAGAGTCCAGGCAGTATTGATGACCTCTA
NTAGAGAGGTAGCTGTTCAGAAATACTCAGGAAATTACTACAGTCCGGAG
AAGGCAAACTATGTTGATTACTGAAATTTTAAGCCTAAAAATTTN

NTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTTTGTAGC
CCATTTTTAATAGGGTTGTTTGGTTTTCTGGAGTCCGACTTCTTGAGTTA
TATATATTGGCTATTAGCCCCCTATCAGATTTAGGATTGGTAAAGATCTT
TTCCCAATCTGTTGGTGGCCTTTTGGTCTTATTGACAGTGTCCTTTGCCT
TACAGAAGCTTTGCAACTTTATGAGGATTTGTCCATTCTTGGCCTTATAA
CACAAGCTACTGGTATTCTGTTCAGAAAATTTTCCCCTGTGCCCATATCT
TTGAGGCTCTTCTGCACTTTCTCCTTTATAAATTTCAGTGTCCCTGGTTT
TATGTGGAATTCTTTGATCTACTTAGACTTGAGCTTTCTACAAGGAGATA
AAAATGGATCATTTGCATTCTTCTATGTGCTAACTGCCAGTTGAGCCATC
AACATTTGTTGAAAATGCTGTTTTCTTTCCACTGGATGGCTATAGCTCCT
TTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGATCTTC
AATTCTATTCCATTGATCTACCTGTCTGTCACTGTACTAGTACCATGCAG
TTTTTATCACAATTGCTCTGTANAACAGCTTTGAGGCCAGGTATGGTGTT
TTCACCCAAATTCTTTTTCTTGTTTAAAAGAGATTTTTGTATCCCAACGT
TTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_n19.b1 MSMg01no463_n19.b1 CHROMAT_FILE:
MSMg01no463_n19.b1 PHD_FILE: MSMg01no463_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:26 2005
         (512 letters)



>mm_chr5_56760188_56761099
          Length = 912

 Score =  975 bits (504), Expect = 0.0
 Identities = 510/512 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacaggtaagttactagtttagctgtttggcaaatcagatcagtgtcctgcattaggta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 712 tcacaggtaagttactagtttagctgtttggcaaatcagatcagtgtcctgcattaggca 653

                                                                       
Query: 61  ggtagtatgaaagaaacaaaagaaatacctcatttttaatttatacctggcttacagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ggtagtatgaaagaaacaaaagaaatacctcatttttaatttatacctggcttacagtct 593

                                                                       
Query: 121 tctgaaggttaggcttaatgaaataaataaaatgagtggtgagttgccttagtgagctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tctgaaggttaggcttaatgaaataaataaaatgagtggtgagttgccttagtgagctcc 533

                                                                       
Query: 181 ctaagaagacattcatgttgatgtgagctcataccatattcacatcaaagctgactcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctaagaagacattcatgttgatgtgagctcataccatattcacatcaaagctgactcatc 473

                                                                       
Query: 241 taagaaaatgcatgttcccagcgtgggcagcactaataatcccaattcatcctactgaat 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 472 taagaaaatgcatgttcccagcgtgggcagcacttataatcccaattcatcctactgaat 413

                                                                       
Query: 301 gaaagttactttccaaaaatttaatgaaatgatacttaactatgtttttaaataatttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaaagttactttccaaaaatttaatgaaatgatacttaactatgtttttaaataatttca 353

                                                                       
Query: 361 cttttggaatgtgttacaaaatctaaaagaagtaatatttcccctaacaattgcttacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cttttggaatgtgttacaaaatctaaaagaagtaatatttcccctaacaattgcttacag 293

                                                                       
Query: 421 taagcagtataaagacaagatggtagacagatcttcaagtcctgttttaaatgtgtatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 taagcagtataaagacaagatggtagacagatcttcaagtcctgttttaaatgtgtatat 233

                                           
Query: 481 tcatttcaattactttgtatatcagcattgtt 512
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tcatttcaattactttgtatatcagcattgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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