Query= MSMg01no463_p08.b1 MSMg01no463_p08.b1 CHROMAT_FILE:
MSMg01no463_p08.b1 PHD_FILE: MSMg01no463_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:34 2005
(528 letters)
>mm_chr5_101456471_101457398
Length = 928
Score = 944 bits (488), Expect = 0.0
Identities = 518/532 (97%), Gaps = 8/532 (1%)
Strand = Plus / Plus
Query: 1 taatacttctgccacatgtccaagaccttaacctttcaattccacttgatgtttccaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatacttctgccacatgtccaagaccttaacctttcaattccacttgatgtttccaata 260
Query: 61 tgtaaacaagtaaataactaccgcctgacaattgaggtctttgaatacttttgataaaat 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaaataagtaaataactaccgcctgacaattgaggtctttgaatacttttgataaaat 320
Query: 121 tagaattacaaaatataatgtcaaacagctcacagtggatgattgatgtatttggaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaattacaaaatataatgtcaaacagctcacagtggatgattgatgtatttggaaatt 380
Query: 181 attaaaaacactgaatgatgttatgctatgtagtcttagtggcaaaacccacatgatccc 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 attaaaaacactgaatgatgttatgctctgtagtcttagtggcaaaacccacatgatccc 440
Query: 241 agcaca----ttttcttcttgtggaccaatgcattagagaacatgacccagatagaaacc 296
|||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcacagaac----catcatgtggaccaatgcattagagaacatgacccagatagaaacc 496
Query: 297 cacacaactaagtcatgtgatttttgatacatgtgtcaaaaatagacattgtagaaaaga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cacacaactaagtcatgtgatttttgatacatgtgtcaaaaatagacattgtagaaaaga 556
Query: 357 cagtctcttcaaccaatggtgctcaggaaggtgcagattcacacgttgaatgaacctaat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cagtctcttcaaccaatggtgctcaggaaggtgcagattcacacgttgaatgaacctaat 616
Query: 417 ctccatctctcacactgtacacaaatcatctccaatggtcaaggactatcacataacatc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctccatctctcacactgtacacaaatcatctccaatggtcaaggactatcacataacatc 676
Query: 477 tggaaccctgaaagtgttggaggaaaaaaagtgttgagaacactttaggata 528
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 677 tggaaccctgaaagtgttggaggaaaaaaagtggggagaacactttaggata 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_p08.g1 MSMg01no463_p08.g1 CHROMAT_FILE:
MSMg01no463_p08.g1 PHD_FILE: MSMg01no463_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:34 2005
(510 letters)
>mm_chr5_101600578_101601487
Length = 910
Score = 909 bits (470), Expect = 0.0
Identities = 497/506 (98%)
Strand = Plus / Minus
Query: 1 tcattactgtttccaatatgcgaaatgcaacatttgaatgaaacatttgtctcttgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tcattactgtttccaatatgcgaaatgcaacatttgaatgaaacatttgtctcttgtcaa 647
Query: 61 aaaggcgtcatgtctgttcttggttagaatatttccacccctacccctcaagacacacac 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 646 aaaggcgtcatgtctgttcttggttagaatatttccacccctactcctcaagacacacac 587
Query: 121 cggcacatttttaggccttcatcatagatcctgacaagagctgaatggctacaggcattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 586 cggcacatttttaggccttcatcatagatcctgacaagagctgaatggctacaggcaatc 527
Query: 181 gagggactaagaacacataagaaatattgtctgtggaattaataaatatcagtagcatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gagggactaagaacacataagaaatattgtctgtggaattaataaatatcagtagcatca 467
Query: 241 ataaccatcttctttcctgttgagtgttggcacaaaagaattggtataatgatgctaatc 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ataaccatcacctttcctgttgagtgttggcacaaaagaattggtataatgatgctaatc 407
Query: 301 ggctgagtgataaatttgtggcttttttgtctccttggatgctgcttctcattcattgtt 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 406 ggctgagtgataaatttgtggcttttttgtctccttagatgctgcttctcattcattgtt 347
Query: 361 gatgggctctcttccctctccatcagagcaagtcttcaatctgactacactgttcccagt 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gatgggctcttttccctctccatcagagcaagtcttcaatctgactacactgttcccagt 287
Query: 421 tcctaacatcactgccaaatccttaggcttgatagaaacccttccatcctacctgaagag 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 286 tcctaacatcactgccaaatccttaggcttgatagaaacccttccatcctacctcaagag 227
Query: 481 atttataggcagcaggaagtcatgtc 506
||||| |||||||||||||||||||
Sbjct: 226 atttaggggcagcaggaagtcatgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
