BAC Information

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BAC

Clone NameMSMg01-464D07
Chromosome5 (Build37)
Map Location 104,458,391 - 104,458,763
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11
Downstream geneNudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464D07.T7 (MSMg01no464_d07.b1)MSMg01-464D07.TJ (MSMg01no464_d07.g1)
ACCAG548676AG548677
length760760
length of high quality
(start - end)
---326 (75 - 400)
definitionCHROMAT_FILE: MSMg01no464_d07.b1 PHD_FILE: MSMg01no464_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:53 2005CHROMAT_FILE: MSMg01no464_d07.g1 PHD_FILE: MSMg01no464_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCTTCCAAATTTTGCGACGTTAAANGAGNNANTATATTTCAAAAAAA
CCGNGGAANTCTCTGCATTTGCCTAAAAACAGAGAANAAGAGAATGTGGG
ATAAAAATTAAATTAATTAGTGGGCTTGTACTCTGCATTGAATAAGAAAG
CAGAATCAAATTAAACTGAGGTGAAGATTAAAATAATAGATATTGGTGAT
CAACTTACAACATCAAAGAACAATGGAACACAGGATAAATAGATGGAAAC
AACAGTTAGTCTTGTTCATCTACTTGACAAGTCTCATGTCAGACTGGCAA
AGGAAAAATATCTACAAATTACCAAGATGTTTGTAATTAAAACCCACATT
ACAAACATAAAATACTTAGGAGTAATCTTACACAAAAATATGAAGATGTT
TTATCTAAAAACTGTGAAGACACTACTCAGAGATATTAAACAAGGAATTT
AAAATTATGGGTTCATAGTTTGAAAGAGGTAGGTGTCACATGGATGTGAG
CTTCTGGAGTCACACCTTCCCGAATTTCTATCCACCCCCACCCTGATGAG
ATGTGTAGCTGATAATATAGTACTTGCCGCACCCCCCCACTATCTAAACT
TCGTCTATGTATACTCAGCGATCTCTCCTCACTTCCTTTTAAGACTGATT
GTTTTTTAACACCTCGTTGCCTATGTTATATCGAACCTATATACCACCAT
AATCCTAAACGTTATCTTAATATGTTAACCCCCCCTTTTATTTCAACTCT
ATTTGATTCN
TTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAAAATTCTTTGAGGATCTCATACACAAACTTT
GATGATATTTACCCCACTCCTGCCCAGACATCCTCCTAAACCCTTCCCAC
TCCTCTCAACGTTGTATTCTCTTTTAAACACGTCTTTACTGGCCATGTAT
TTTCTCTGACAAGTGTTGACAAAATTCCTTTTCTTTTAAAAACTGGGCAA
TCTTTTAGTTGCTGAGTTTCCAGAATTCTTTATATGTTCTGGATGCCTAT
ATCAGATATTTGCTTTGTCTTCATAATTCCCCCCTTTGTCAATAGTGCCT
TTGGAAAGTCTAATTTATCTATTTTTTTCCTTTTGATGCTCTGCATTGGG
TATTACAGTGGCCTAGTAAGGAATTCTTCTCAGCTGTAACTTTTACAAGT
ACAGCGACATTGAAACCTTTTCGTTATTTGTTCTGTTTTTGTTCAACCAC
TCTCAATACCTTCTTTTTTACTGTGGACAATGAATCCATGAAAATGTTTA
TGTTTTGCTGCATCATTCCTCTGTTCTACTATTACAGATTATCTCTGTCT
CTCCACTGTAACACCAACTTCTTTCAATTATCCTTACCTGTATCTGCCCT
CCATACATGAAAAATCTTCTTTATGTTTTTCACATCCCCTTGTTACCCTT
TACCCCTTTTATCGCGTTTCACTAATTTCGTTCCCTTACATGCCTATACT
ATATTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_d07.g1 MSMg01no464_d07.g1 CHROMAT_FILE:
MSMg01no464_d07.g1 PHD_FILE: MSMg01no464_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:53 2005
         (326 letters)



>mm_chr5_104458191_104458916
          Length = 726

 Score =  511 bits (264), Expect = e-149
 Identities = 325/374 (86%), Gaps = 49/374 (13%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttgaggatctcatacacaaactttgatgatatttaccccactcctgcccagacatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgaggatctcatacacaaactttgatgatatttaccccactcctgcccagacatcct 260

                                                                       
Query: 61  cctaaacccttcccactcctctcaacgttgtattctcttttaaacacgtctttactggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaaacccttcccactcctctcaacgttgtattctcttttaaacacgtctttactggcc 320

                                                                       
Query: 121 atgtattttctctgacaagtgttgacaaaattccttttcttttaaaaactgggcaatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtattttctctgacaagtgttgacaaaattccttttcttttaaaaactgggcaatctt 380

                                                                       
Query: 181 ttagttgctgagtttccagaattctttatatgttctggatgcctatatcagatatttgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagttgctgagtttccagaattctttatatgttctggatgcctatatcagatatttgct 440

                                                                       
Query: 241 ttgtc--------------ttca-ta-----att--cccccctttgtcaatagtgccttt 278
           |||||              |||| ||     |||  ||||||||||||||||||||||||
Sbjct: 441 ttgtcaatattttttcccattcaataggttgattttcccccctttgtcaatagtgccttt 500

                                                                       
Query: 279 ggaa--------------------------agtctaatttatctatttttttccttttga 312
           ||||                          ||||||||||||||||||||| ||||||||
Sbjct: 501 ggaagcacttaatgtttttaattttcgtaaagtctaatttatctatttttt-ccttttga 559

                         
Query: 313 tgctctgcattggg 326
           ||||||||||||||
Sbjct: 560 tgctctgcattggg 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)