Query= MSMg01no464_j15.b1 MSMg01no464_j15.b1 CHROMAT_FILE:
MSMg01no464_j15.b1 PHD_FILE: MSMg01no464_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:25 2005
(429 letters)
>mm_chr5_122596808_122597636
Length = 829
Score = 770 bits (398), Expect = 0.0
Identities = 422/430 (98%), Gaps = 1/430 (0%)
Strand = Plus / Plus
Query: 1 ggcagaagaatggctatgagttcaagaccaacctgggccacatcaccctgtcaaaaacaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ggcagaagaatggctatgagttcaagaccaacctgggccacagcaccctgtcaaaaacaa 260
Query: 61 aaacaaacaaaacaacaataaaaaactggtttgtatgagtgtcctagtccaaggtccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaaacaaaacaacaataaaaaactggtttgtatgagtgtcctagtccaaggtccatg 320
Query: 121 tattaaaggcttgatcactggtctttggaaacatggagagctactgggtcctttaatagg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tattaaaggcttgatcactggtctttggaaacatggagagctactgggtcctttaagagg 380
Query: 181 tggagcctacccgggcgtggtggcacacgcctttaatccc-agcactcgggaggcaaagg 239
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tggagcctagccgggcgtggtggcacacgcctttaatccccagcactcgggaggcaaagg 440
Query: 240 tttgttgatttctgagttcgaggccagcctggtctacagagtgagttccaggacagccaa 299
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtggatttctgagttcgaggccagcctggtctacagagtgagttccaggacagccaa 500
Query: 300 ggatacacagagaaaccctgtctcaaaaaacaaaacaaaacaaaagaaaaaccccaaaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatacacagagaaaccctgtctcaaaaaacaaaacaaaacaaaagaaaaaccccaaaca 560
Query: 360 aacaaaaaaaggaggtggagcctagttaggtggtggctatgcctttaatcccagccctcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaaaaaaaggaggtggagcctagttaggtggtggctatgcctttaatcccagccctcc 620
Query: 420 ctcctgaggc 429
||||||||||
Sbjct: 621 ctcctgaggc 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no464_j15.g1 MSMg01no464_j15.g1 CHROMAT_FILE:
MSMg01no464_j15.g1 PHD_FILE: MSMg01no464_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:25 2005
(474 letters)
>mm_chr5_122776460_122777333
Length = 874
Score = 886 bits (458), Expect = 0.0
Identities = 470/474 (99%)
Strand = Plus / Minus
Query: 1 tgcagcgtcagaagatgccatgaaaattactgagagctactactcagggccagacacctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgcagcgtcagaagatgccatgaaaattactgagagctactactcagggccagacacctg 615
Query: 61 gatgagaggctgcactgtcacctctagtctcaggaccttaaccttgctcaaggccagact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gatgagaggctgcactgtcacctctagtctcaggaccttaaccttgctcaaggccagact 555
Query: 121 cctaaagcagcaagagactgcttgcaggtgagctcaaggcagctgctgccctttaacagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cctaaagcagcaagagactgcttgcaggtgagctcaaggcagctgctgccctttaacagg 495
Query: 181 tgaccgcagatttcactgcaagaacagcacacatgtgctctccagctgcagagggcagag 240
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 494 tgactgcagatttcactgcaagaacagcacacatgtgctctccagctgcagagggcagtg 435
Query: 241 tgtgcaacggctctctcagggctagatagcagagtgccactttgcttgcttctttcaggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgtgcaacggctctctcagggctagatagcagagtgccactttgcttgcttctttcaggt 375
Query: 301 tactgccatggccagagtctggcaccttcctgcattcttaggctcataaattgcctcctt 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 374 tactgccatggccatagtctggcaccttcctgcattcttaggctcataaattgccttctt 315
Query: 361 ctatctcccaagtcgggtagtcaagtttgtatcctccctgactggcaacatcagctttgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctatctcccaagtcgggtagtcaagtttgtatcctccctgactggcaacatcagctttgc 255
Query: 421 aacctgatcccatctctacctacctatgtgatgggtgttctagggttcggtcca 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aacctgatcccatctctacctacctatgtgatgggtgttctagggttcggtcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
