Query= MSMg01no466_j08.b1 MSMg01no466_j08.b1 CHROMAT_FILE:
MSMg01no466_j08.b1 PHD_FILE: MSMg01no466_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:07 2005
(469 letters)
>mm_chr5_108901614_108902484
Length = 871
Score = 766 bits (396), Expect = 0.0
Identities = 450/470 (95%), Gaps = 9/470 (1%)
Strand = Plus / Minus
Query: 5 gaattccagtcttc-cctcctcttcctcctcctcctcctccttctccttctcc--ttctc 61
||||||||||| || ||||||||||||| ||||||||| ||| |||| |||| |||||
Sbjct: 740 gaattccagtc-tctcctcctcttcctcttcctcctcc-cct--tcctcctccttttctc 685
Query: 62 tctctctccctccctctatttgt--tctttctctaggtaggctcccttcctactttgcct 119
|||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 684 tctctctccctctctctatttgttctctttctctaggtaggctcctttcctactttgcct 625
Query: 120 ttactccacccacagatgtagtagatggactactacatccagcctttttgttggacaaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttactccacccacagatgtagtagatggactactacatccagcctttttgttggacaaat 565
Query: 180 ggcccatcccatctcatcttatcctatcactgaatagtgacccacctcagacctcaatgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggcccatcccatctcatcttatcctatcactgaatagtgacccacctcagacctcaatgg 505
Query: 240 ttagtgaagttcgaacctcaactcaaggttttgtttacagccactacagtgtctaccaag 299
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 504 ttagtgaagttcgaacctcaactcaaggcactgccaacagccactacagtgtctaccaag 445
Query: 300 aagatacagagccccaaagaaggttagataaggtcctgtggctccaacctaatcaccagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagatacagagccccaaagaaggttagataaggtcctgtggctccaacctaatcaccagt 385
Query: 360 tactttgacatgaatctagcatatggcctttgatgtctgggtccagtcccacttcaggaa 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 tactttgacatgaatctagcatatggcctttgatatctgggtccagtcccacttcaggaa 325
Query: 420 tttagtcatcctcatctttgtactttttgtgagagggaacagttaaatgt 469
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttagtcatcctcatctttgtactttttgtgagagggaacagttaaatgt 275
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 871
Length adjustment: 10
Effective length of query: 459
Effective length of database: 861
Effective search space: 395199
Effective search space used: 395199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no466_j08.g1 MSMg01no466_j08.g1 CHROMAT_FILE:
MSMg01no466_j08.g1 PHD_FILE: MSMg01no466_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:07 2005
(360 letters)
>mm_chr5_108752263_108753022
Length = 760
Score = 665 bits (344), Expect = 0.0
Identities = 356/360 (98%), Gaps = 1/360 (0%)
Strand = Plus / Plus
Query: 1 tttattgtggagattttcagacctactaagtgtaaccaagcagtgtcagtccccaggtgt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatcgtggagattttcagacctactaagtgtaaccaagcagtgtcagtccccaggtgt 260
Query: 61 agttctagactgcagcagttgctattcagttatcccacctgtgcactcattttccttgtt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttctagactgcagcaggtgctattcagttatcccacctgtgcactcattttccttgtt 320
Query: 121 atctaggatcagacttcagaaccacagacaggcattttctctatgtgatcccggttccgt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 atctaggatcagacttcagaaccacagataggcattttctctatgtgatcccggttccgt 380
Query: 181 tactacatttcaaaaatgccattaattccttaatatcatctaataatgttcagatttcca 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ta-tacatttcaaaaatgccattaattccttaatatcatctaataatgttcagatttcca 439
Query: 241 gtgtctggctctttaggtgtctttgtttgttaggagcaaataaggtctatacattgtgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtgtctggctctttaggtgtctttgtttgttaggagcaaataaggtctatacattgtgat 499
Query: 301 atgccagtgtgtctcttagatctcttttaacctgtaaggcttccaactcttttaatttac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgccagtgtgtctcttagatctcttttaacctgtaaggcttccaactcttttaatttac 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space: 263601
Effective search space used: 263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
