Query= MSMg01no467_b19.b1 MSMg01no467_b19.b1 CHROMAT_FILE:
MSMg01no467_b19.b1 PHD_FILE: MSMg01no467_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:52 2005
(578 letters)
>mm_chr5_9036371_9037345
Length = 975
Score = 785 bits (406), Expect = 0.0
Identities = 444/458 (96%), Gaps = 3/458 (0%)
Strand = Plus / Plus
Query: 121 cttcttagacacaggattttcgatcagttctgtttgacttatcatcttcttcactcactt 180
||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||
Sbjct: 321 cttcttagacacaggatttacgatcagttccgtttgacttatca---tcttcactcactt 377
Query: 181 tcagacattattattcccttttcgtgacactagggatcacttgctttatgtgtggcaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 378 tcagacattattattcccttttcgtgacactagggatcacttgctttatgtgttgcaggc 437
Query: 241 aagctgtgtttctctgagctatttctccatgctttttacatcgtaataacgtctgtggta 300
|||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagctgtgcaccactgagccatttctccatgctttttacatcgtaataacgtctgtggta 497
Query: 301 gaacagaatgttaacattttgatctggttcagttatcggctgtcctttctggggatcgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaacagaatgttaacattttgatctggttcagttatcggctgtcctttctggggatcgta 557
Query: 361 ttttaatatctagctcccgccccctgatactcaagctccagcctctggggagtttctcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttttaatatctagctcccgccccctgatactcaagctccagcctctggggagtttctcct 617
Query: 421 tttcattcctacaattgttatgattttatgattattttccattctgagttaatattttta 480
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct: 618 tttcattcctacaattgttatgattttacgactattttccattctgggttaatattttta 677
Query: 481 aaagcctaagatttcatcatgtttttgcctgttcttccttccctcattccctcctttttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaagcctaagatttcatcatgtttttgcctgttcttccttccctcattccctcctttttc 737
Query: 541 cccaccctctttctttctcttccctttcattactcata 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cccaccctctttctttctcttccctttcattactcata 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 975
Length adjustment: 10
Effective length of query: 568
Effective length of database: 965
Effective search space: 548120
Effective search space used: 548120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_b19.g1 MSMg01no467_b19.g1 CHROMAT_FILE:
MSMg01no467_b19.g1 PHD_FILE: MSMg01no467_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:52 2005
(491 letters)
>mm_chr5_9243126_9244016
Length = 891
Score = 752 bits (389), Expect = 0.0
Identities = 398/401 (99%)
Strand = Plus / Minus
Query: 3 aaaaaatcacagataacagcccattaatcagaacgaacctgacatctagctgaggaaaac 62
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aaaaaatcacagacaacagcccattaatcagaacgaacctgacatctagctgaggaaaac 342
Query: 63 agccaaccagaggactgagagagttcctggaatttttctaaggcctaaccaaaaatggtt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agccaaccagaggactgagagagttcctggaatttttctaaggcctaaccaaaaatggtt 282
Query: 123 aaaactaatatagcaaccaattagacttatactaatgcaactgctgcttacctagccaat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aaaactaatatagcaaccaattagacttatactaatgcaactgctgcttacctagccaat 222
Query: 183 cacataagaatgatataactaaccctaaaattgctttagatggctttaaaaagagctggc 242
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cacataagaatgatataaccaaccctaaaattgctttagatggctttaaaaagagctggc 162
Query: 243 aagctcatctggggtggccatgttgtaagaatggctgacccctgcatgctggttactctg 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 161 aagctcatctggggtggccatgttgtaagaatggctgacccctgcatgctggttgctctg 102
Query: 303 cagaataaacgccctttgcttttgcatgctacttgaatctgaggtcttactttggacagg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 cagaataaacgccctttgcttttgcatgctacttgaatctgaggtcttactttggacagg 42
Query: 363 gattctcacaacctttcagtaagagtgctaagaggaaagat 403
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 gattctcacaacctttcagtaagagtgctaagaggaaagat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
