BAC Information

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BAC

Clone NameMSMg01-469P12
Chromosome5 (Build37)
Map Location 40,405,555 - 40,405,865
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469P12.T7 (MSMg01no469_p12.b1)MSMg01-469P12.TJ (MSMg01no469_p12.g1)
ACCAG553080AG553081
length760752
length of high quality
(start - end)
311 (329 - 639)90 (126 - 215)
definitionCHROMAT_FILE: MSMg01no469_p12.b1 PHD_FILE: MSMg01no469_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:43 2005CHROMAT_FILE: MSMg01no469_p12.g1 PHD_FILE: MSMg01no469_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTCTAAAAATTGCGGCCGGAANACGAATCACACTCAACACCACGGTCCG
CGGAATTCAGAGATGCCGAATATCACAGGTCTGAGCAAGAAAATCTCTGG
TAAGATACCAGAATCCAGGTATGTGTCAACAACTGGATTTATTTCTGGAG
GAAATTGGTAGACTGAGAAAGGAGCATACCAATCAGCTTTCTGTTGAGAA
AGATGAGAGCCAAGACTTAGGTTAGGGTCCAAGGAATAACTTGCTCAAGA
CGCATAATGAAGTAGATAGATTGAAGAGTTGAGATTTAAACAGACCAGCT
GTGAAGATAGTATGTTCATGTCTTTTTTATTGATAATAACAATAATAGAA
AAACAAACTTCATGGAGCTATCAATGTGTCAAGAAAGCACAGATGGAAGA
AACTTTGTCTGGGTTTGTTCTCAGCTTTGGTACCTGATAACTCAGTGACA
TGGACTATTCGCTAATCCTTGCTTCAGCTTCATGATAATAAAGTTATTTT
CAGAATTAAATGATGTAATATTTGTGAAATACATTGCATAGAATTGAAGT
ACCTTATTTTTTACAGTTATGATCATTATTCTGTAAATGATATTAGGAAG
AGTAAATTGAGGCAGAAAGATACCTTGGAACTTTTTATAGATTAGCATAA
ATGTGATATAATAAAGACCGGATTTGAACCACAGCCATATGTCCCCATAA
CTCCTAGAGCTATCCCTACCTATATCTCCTATTTTACTGGGGTCTGGCTT
AATCCTTCTC
CGATGCACGGGGAGCAGGGAGGAGCCCTTGGTCATTGGGAGGNGAANNAC
CCATTATNATCATGCGCGCGCAAANNCAGCNGGAAAAAAAAAAAACCCAG
AACACNAAATTCCATTATCAACAATAAAAGAACTTCTGGGGGAATTACCA
CCTCTATCTAGTTTTACAGAGCAATAGGGATAGAAAATGCATGGTATTGG
CACAGAGACAAGCAAATAGACAAATGAAATAGAATTGAACACCTGTTAAT
AAATCCATACACCTGTGGTCACTTTGACAAAGAAGCCAAAACCATCCAGG
GGAAAGAATTTTTTTTTTTCAGCAAACGGCGCNGGNCCAACCGGAGGCCA
ANATGCAGAACAAGGCGAACGGACCCACNCNNACCCCCCCGCACAAAGCC
CACGCCCAAGCGGACCAAGGACCCCCACACANAACCAGACACCCCGAACC
CAANAGAAGAGAAAGNGGGGAAGCGCCCAGAACACCNCAGCACAGGCGAA
CACCCCCCGAACAGAACAACGGCCCACGCCCCAAGACGACAGANCCAAAA
ACGGCACCCCCAAAAACCGAAACGCCCCCGCAAGGCCAAGGACACCGCCC
AGAGAACAAAACGGCACCCCACACGAGCGAGAAAAGACCCCCCACCATTT
CTTATTCTTGATAAAGCGCTAATATTCCCCCACATACACAGAACTCCCCA
TCGCTAGACCTCCCCAGAACCCAATAATCCCTACTTTACCACCCCGCCCC
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_p12.b1 MSMg01no469_p12.b1 CHROMAT_FILE:
MSMg01no469_p12.b1 PHD_FILE: MSMg01no469_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:43 2005
         (311 letters)



>mm_chr5_40405355_40406065
          Length = 711

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgataataacaataatagaaaaacaaacttcatggagctatcaatgtgtcaagaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgataataacaataatagaaaaacaaacttcatggagctatcaatgtgtcaagaaagc 260

                                                                       
Query: 61  acagatggaagaaactttgtctgggtttgttctcagctttggtacctgataactcagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagatggaagaaactttgtctgggtttgttctcagctttggtacctgataactcagtga 320

                                                                       
Query: 121 catggactattcgctaatccttgcttcagcttcatgataataaagttattttcagaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggactattcgctaatccttgcttcagcttcatgataataaagttattttcagaatta 380

                                                                       
Query: 181 aatgatgtaatatttgtgaaatacattgcatagaattgaagtaccttattttttacagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgatgtaatatttgtgaaatacattgcatagaattgaagtaccttattttttacagtt 440

                                                                       
Query: 241 atgatcattattctgtaaatgatattaggaagagtaaattgaggcagaaagataccttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgatcattattctgtaaatgatattaggaagagtaaattgaggcagaaagataccttgg 500

                      
Query: 301 aactttttata 311
           |||||||||||
Sbjct: 501 aactttttata 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)