BAC Information

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BAC

Clone NameMSMg01-470L12
Chromosome5 (Build37)
Map Location 71,994,105 - 71,994,279
singlet/doubletsinglet
Overlap geneGabra4
Upstream geneGabrg1, Gabra2, LOC635092, 4930503B16Rik
Downstream geneGabrb1, LOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470L12.T7 (MSMg01no470_l12.b1)MSMg01-470L12.TJ (MSMg01no470_l12.g1)
ACCAG553656AG553657
length752768
length of high quality
(start - end)
178 (330 - 507)382 (76 - 457)
definitionCHROMAT_FILE: MSMg01no470_l12.b1 PHD_FILE: MSMg01no470_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:43 2005CHROMAT_FILE: MSMg01no470_l12.g1 PHD_FILE: MSMg01no470_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAACACACAGCCGCG
GAATTCTTCACCTTTCCCCTTGACATTCTGTGGGAAATAAGGATTGGGGG
TTAATTAGTATTGGCAGTAAGGTTCAAAATTCAGTTCTCCACAGTGATGA
TGCTGCATCTTTCCAACTGCCTAGTGTCTAGCAAATTGCTTCTAGTGTTT
ATTCTCCATCCATTTTCAATTTTATCACAACAGAAAGTGAGGCATTTCTT
CACATTGCTGGAGCCTATTAACAAATGACTTAAAGACAGTCTGCAAATGT
CTACCAAGTCTCCTGAAATTGTCTGNATTTTTGACTTTCCTAGTAATTCA
GGTGCTTTTCTACCTCTGAGGAAAAGTCACATGTCTCATTTTATAATTTC
CACGTTAAAATAACAACTATATTTTGTTTCCTATAATTTCCTCCCATAGG
GTCATATTTTACTATGTCCTTCCTGAGAGCATGATTTCAGTTTAAATTTT
TCTTGCTTTTGTGGAGATATTCATGCAACTTTTAAATAGCATTGCAGCTG
TACAGAACAGCTGTTCTAGTGTGTGCTTTCTAAGCCAGCTTTTCAATAAA
CGATAGCTTCCCATGACTGAACACAGCCGAAAGAGTCCCGTTAACCCACC
CTCTGCATTTCTTGTTTACCTGCTCCCCAGCCCCTTTGTACACTATTTGC
CTCCCCTTCTCTTTTTGCCTCTCGCCACATCCCCCCGGCCTTTCTACCCT
CN
CGAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCACCATTTT
TTAATGGGGTTATTCGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATA
TATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTT
CCCAATCTGTTGGTGGTGTTTTTGTCTTATTGATGGTGTCTTTTGCCTTG
CAGAAACTTTTGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTAC
AGTACAAGCCATTGCTGTTCTGTTCTGGAATTTTTCCCCTGTGCCCATAT
CTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGT
TTTATGCAACAGTGTTTCCAACAATGAGTAGAATGTTAAATGAGTAAAGC
ACTAAAAAATACAGAAACTATGATCTGTATGTGTTGGTGCTTGGCACCCA
CGGTCTTTGCTGGGATGTATATCTGCTATAATTTCTTTTCCTATTGCTGT
GTCATATACTTTCACAAAATCATCTTCATGGCCGAAGGGTTTTATTTATC
CTTCACCTTATAGCTAGCTTTCTCCCCCTTATTATTTGCTTTGCCTTTGC
TTTTTTACCGCCCCTTTTTTTACCGTTCCGGATGTTTTTATTCTTGCTCG
GCCCTCTTTGCATTTTGGTTTTATAACAACGGGGGCTAATCTCTATTCCC
CGTTCTTTTCTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_l12.b1 MSMg01no470_l12.b1 CHROMAT_FILE:
MSMg01no470_l12.b1 PHD_FILE: MSMg01no470_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:43 2005
         (178 letters)



>mm_chr5_71993904_71994481
          Length = 578

 Score =  339 bits (175), Expect = 8e-98
 Identities = 175/175 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   ttgactttcctagtaattcaggtgcttttctacctctgaggaaaagtcacatgtctcatt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttgactttcctagtaattcaggtgcttttctacctctgaggaaaagtcacatgtctcatt 317

                                                                       
Query: 62  ttataatttccacgttaaaataacaactatattttgtttcctataatttcctcccatagg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttataatttccacgttaaaataacaactatattttgtttcctataatttcctcccatagg 257

                                                                  
Query: 122 gtcatattttactatgtccttcctgagagcatgatttcagtttaaatttttcttg 176
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtcatattttactatgtccttcctgagagcatgatttcagtttaaatttttcttg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)