Query= MSMg01no471_b15.b1 MSMg01no471_b15.b1 CHROMAT_FILE:
MSMg01no471_b15.b1 PHD_FILE: MSMg01no471_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:14 2005
(663 letters)
>mm_chr5_77599537_77600599
Length = 1063
Score = 841 bits (435), Expect = 0.0
Identities = 457/465 (98%), Gaps = 4/465 (0%)
Strand = Plus / Minus
Query: 5 gaattctattggataccgtg-g-gtcatgaaggcagcccagatttcctgtgagagaatgg 62
|||||||||||| || ||| | ||||||||||||||||||||||||| |||||||||||
Sbjct: 463 gaattctattgg--acagtgtgcgtcatgaaggcagcccagatttcctatgagagaatgg 406
Query: 63 atttgaaatttgtggtctaagaaccaaacatgtttgttatgacttaatccttcctagttt 122
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 405 atttgaaatttgtggtctaagaactaaacatgtttgttatgacttaatccttcctagttt 346
Query: 123 gggtagctatgaacatgtgttgctatgcaaacagttgtccataagaggtcagtcacagac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gggtagctatgaacatgtgttgctatgcaaacagttgtccataagaggtcagtcacagac 286
Query: 183 cttgagaaaagctggagaatggtcctcttgaattaacctgctaaggctttgctatgcctg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cttgagaaaagctggagaatggtcctcttgaattaacctgctaaggctttgctatgcctg 226
Query: 243 gcgtggtgctagaagtggatgctagggatccaccctataatcagcttccaaacgctgaca 302
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 225 gcgtggtgctagaagtggatgctagggatccaccccataatcagcttccaaacgctgaca 166
Query: 303 ccattgcatacactagcaagattttgttgaaaggacccagatgtagctgtctcttgtgag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ccattgcatacactagcaagattttgttgaaaggacccagatgtagctgtctcttgtgag 106
Query: 363 actatgccggggcctagcaaacacagaagtggatgctcacagtcagctattggagggatc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 actatgccggggcctagcaaacacagaagtggatgctcacagtcagctattggagggatc 46
Query: 423 acagggcccccaatggaggagctagagaaagtacccaaggagcta 467
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 acagggcccccaatggaggagctagagaaagtacccaaggagcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_b15.g1 MSMg01no471_b15.g1 CHROMAT_FILE:
MSMg01no471_b15.g1 PHD_FILE: MSMg01no471_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:14 2005
(427 letters)
>mm_chr5_77436608_77437438
Length = 831
Score = 774 bits (400), Expect = 0.0
Identities = 422/432 (97%), Gaps = 7/432 (1%)
Strand = Plus / Plus
Query: 1 aacacaataattgagcggcttctatgtatatatatatatatattaaaaaagggtcttgtt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 203 aacacaataattgagcggcttctatgtatatatatatatat--taaaaaagggtcttgtt 260
Query: 61 ttagatcggttacacttaaactgaatttatttgatgcat----taaaagtaataaacacc 116
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ttagatcggttatacttaaactgaatttatttgatgcatgcattaaaagtaataaacacc 320
Query: 117 caaggagaaacttgaaacttgtgccctgttcttaggagtgtaggctattaaggggaaaaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggagaaacttgaaacttgtgccctgttcttaggagtgtaggctattaaggggaaaaa 380
Query: 177 aattgaatttgtttgctgtagcaagtctcctttatttgtatatgccccaaaggaataaaa 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattgaatttgtttgctgtagcaagtctcctttatttgtatatgccccaaaggaataaaa 440
Query: 237 tcagagagccaatctatttttatacatctgtggtcatggcagcattattgttattccaac 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagagagccaatctatttttatacatctgtggtcatggcagcattattgttattccaac 500
Query: 297 agccatag-ttagaagttatcagtgtctatctgctgatgaatgcataacaaatcgtggtg 355
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccatgggttagaagttatcagtgtctatctgctgatgaatgcataacaaatcgtggtg 560
Query: 356 tctccatacagcccattcctttaactttcagagggaagggggttctactgcatgcaacca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctccatacagcccattcctttaactttcagagggaagggggttctactgcatgcaacca 620
Query: 416 cacagaggaacc 427
||||||||||||
Sbjct: 621 cacagaggaacc 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 831
Length adjustment: 9
Effective length of query: 418
Effective length of database: 822
Effective search space: 343596
Effective search space used: 343596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
