Query= MSMg01no471_m01.b1 MSMg01no471_m01.b1 CHROMAT_FILE:
MSMg01no471_m01.b1 PHD_FILE: MSMg01no471_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:07 2005
(665 letters)
>mm_chr5_55342991_55344054
Length = 1064
Score = 1197 bits (619), Expect = 0.0
Identities = 653/667 (97%), Gaps = 8/667 (1%)
Strand = Plus / Plus
Query: 1 ctctgaagtgtgagagcatatgcaaaacttctggaaaatgcacagcacccaaagaaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctctgaagtgtgagagcatatgcaaaacttctggaaaatgcacagcacccaaagaaaata 263
Query: 61 ttcaaagagagtttcactattttta-aaaatattttactaattattttaaatcattgccc 119
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 ttca----gagtttcactatttttttaaaatattttactaattattttaaatcattgccc 319
Query: 120 ccaatttgcatttaaaccaacatttctggtatttcatatctaaaatgtcagagagttaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccaatttgcatttaaaccaacatttctggtatttcatatctaaaatgtcagagagttaaa 379
Query: 180 aaactgtgtcttaaaatcatgaaatgaaaaataaatcttttatcttgtttagacttactt 239
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 aaactgt--cttaaaatcatgaaatgaaaaaaaaatcttttatcttgtttagacttactt 437
Query: 240 ttaaaccataatcagagaaaaataatgtatttgctttcaaaaactttgttcaaccagtga 299
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttgaaccaaaatcagagaaaaataatgtatttgctttcaaaaactttgttcaaccagtga 497
Query: 300 gatgaggtgaattgaaataaatagggattttaaaggaggatcaaaaagaaagtacaagtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gatgaggtgaattgaaataaatagggattttaaaggaggatcaaaaagaaagtacaagtg 557
Query: 360 accaactgtgggacattcactagagggaataactgtagtaacctcacatagcaacctgtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 accaactgtgggacattcactagagggaataactgtagtaacctcacatagcaacctgtg 617
Query: 420 tcttgtcagg-agaagagttctgcgattctgaggagttgtgttaggaacctataaattag 478
||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 618 tcttgtcggggagaagagttctgcgattctgaggagttgcgttaggaacctataaattag 677
Query: 479 gaaaatatggaataaatggtgaagatgtgccagaacagccatattcctttctattctgga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaaaatatggaataaatggtgaagatgtgccagaacagccatattcctttctattctgga 737
Query: 539 caccatgagttgaccttctctattctgatatgccttctctatcacaaaacactgaatcct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 caccatgagttgaccttctctattctgatatgccttctctatcacaaaacactgaatcct 797
Query: 599 cagatactataaatccaaataaaaaatttcccccttaaactctctggtaaggtttgttat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cagatactataaatccaaataaaaaatttcccccttaaactctctggtaaggtttgttat 857
Query: 659 cacagag 665
|||||||
Sbjct: 858 cacagag 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1064
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1054
Effective search space: 690370
Effective search space used: 690370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_m01.g1 MSMg01no471_m01.g1 CHROMAT_FILE:
MSMg01no471_m01.g1 PHD_FILE: MSMg01no471_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:07 2005
(324 letters)
>mm_chr5_55521556_55522279
Length = 724
Score = 271 bits (140), Expect = 5e-77
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 1 aataaacctaaaatgtttattagtgaaattgttttaaatgagaaaattatgttaaccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aataaacctaaaatgtttattagtgaaattgttttaaatgagaaaattatgttaaccatt 281
Query: 61 atttaactaattctaattagttaaattatgcaaagatgaaacattttgaagtagtaggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atttaactaattctaattagttaaattatgcaaagatgaaacattttgaagtagtaggta 221
Query: 121 tgataatagcatccccaaga 140
||||||||||||||||||||
Sbjct: 220 tgataatagcatccccaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
