Query= MSMg01no471_m19.b1 MSMg01no471_m19.b1 CHROMAT_FILE:
MSMg01no471_m19.b1 PHD_FILE: MSMg01no471_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:11 2005
(535 letters)
>mm_chr5_93147439_93148377
Length = 939
Score = 984 bits (509), Expect = 0.0
Identities = 527/535 (98%), Gaps = 4/535 (0%)
Strand = Plus / Minus
Query: 5 gaattcactcaattcccccagtggcccttgagcttttgatcctcctacgtcaggctactc 64
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 743 gaattcactcaagagccccagtggcccttgaacttttgatcctcctacgtcaggctactc 684
Query: 65 agtagctgggatccagtcctgtgctaccaagcctggctatgagtatactttcccatggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agtagctgggatccagtcctgtgctaccaagcctggctatgagtatactttcccatggga 624
Query: 125 gcatagccaatagagcagctggggacttgggtcacacacatcaccaacaacagctctttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcatagccaatagagcagctggggacttgggtcacacacatcaccaacaacagctctttg 564
Query: 185 gacatctaaggccacacttttcctgaa----cccccccccccccgcacccactagctgtg 240
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 563 gacatctaaggccacacttttcctgaacccccccccccccccccgcacccactagctgtg 504
Query: 241 acctctcacctctgcactcagtccttcagcagtctgccaccttgagcttgtgagctccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acctctcacctctgcactcagtccttcagcagtctgccaccttgagcttgtgagctccca 444
Query: 301 gacagtggccatcctttcttctcagcatttccagtatctagcccatggaataaacctggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gacagtggccatcctttcttctcagcatttccagtatctagcccatggaataaacctggc 384
Query: 361 tgagtggattttgtactcatcggtacaaattctagaaggtttttcaagcccggtgtgtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgagtggattttgtactcatcggtacaaattctagaaggtttttcaagcccggtgtgtca 324
Query: 421 gagttgattgtcaaggtttgggtggtccttgggattgagcctagcacttcatgcattttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagttgattgtcaaggtttgggtggtccttgggattgagcctagcacttcatgcattttg 264
Query: 481 ggcaagtactctaccactgagctacatctccagcccaagctttactctcttaaat 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggcaagtactctaccactgagctacatctccagcccaagctttactctcttaaat 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 939
Length adjustment: 10
Effective length of query: 525
Effective length of database: 929
Effective search space: 487725
Effective search space used: 487725
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_m19.g1 MSMg01no471_m19.g1 CHROMAT_FILE:
MSMg01no471_m19.g1 PHD_FILE: MSMg01no471_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:11 2005
(536 letters)
>mm_chr5_92986963_92987898
Length = 936
Score = 607 bits (314), Expect = e-178
Identities = 320/322 (99%), Gaps = 1/322 (0%)
Strand = Plus / Plus
Query: 1 actcatcttgaggcaacaaactcttggggtacacaacgtagtatctgaatacagagcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcatcttgaggcaacaaactcttggggtacacaacgtagtatctgaatacagagcagc 260
Query: 61 accggaccaacccccagcactggggtgattaagttagttgcaaatataaagaatatgaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accggaccaacccccagcactggggtgattaagttagttgcaaatataaagaatatgaac 320
Query: 121 ttcatgaacatagttaataaagagaagggttattgctaataggtagagcagattggtcat 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ttcatgaacatagttaataaagagaagggttattgctaataggtagagcatattggtcat 380
Query: 181 caattccaagatgagatgtggcttaccatgcctgtaccttcagttgcttggagagtgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caattccaagatgagatgtggcttaccatgcctgtaccttcagttgcttggagagtgatt 440
Query: 241 tattaagggcaaggagaagctttctgtaaactatttcttttttcttttcttttcttttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattaagggcaaggagaagctttctgtaaactatttcttttttcttttcttttcttttct 500
Query: 301 tttcttttcttttctttttttt 322
||||||||||||| ||||||||
Sbjct: 501 tttcttttctttt-tttttttt 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
