NACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTATCCGAGAGGATCC
GCGGAATTCACACCCTACCCAAAACCAGGGAACTATTTAAAAGTTAAGGA
ATCTGTCATAGGTGCATCATTACAGGAACAATGGAAGGGATGGGAAGTTT
ATCAGGACACAGTGGGTGAGATAGCATGATTCAGGATGGGAGGAAGCCAC
TCTGTTCCTGCGTTGGAGAAGGAGGAGAAGGCCAAGATCCTCAGAGCTCA
GGAGTGAGGCTGCTTAGGGCTGGGGAGAAAGGCTGTGGAGAGAGTGATGC
TGGAGAAGCAAGCCTGGCTTTTCCTGTCTAGCTACTAAGCAGTCTTGGTC
AAGTGAAGCAGTGAGGTTAGCCACACCATAATACAGAGCAAGGGAAGAAC
AAAAGCATGAAAATAAAACTGAAACAAATCTGAGGGCAAGAAGGCACTGA
TGTTTCCTGTGGATTGCTGTAAGACCTGTGTTTCCAAGCATTGCTTCCAC
ATTAATCATTTGTGTTTGTCTCTTCATTGAAATGGTTATGATTCACAATG
TCCCTTCCTTCAGAATCCTCCCTGGTCCTTTCACATTTATGTTTAACTCT
CCTAGTAACCAGACCCCCTGTAATGACTTCATACAGGCACATTGGTTGTT
GGCATAGTCAATTGGCAGAGTAGAAGAAAGAGCCCATGTTAGAAGAGCTC
CTCTCTTGCACGCGCTCAACTGGCCAGGAAGAACGN

NNNCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACATGTAAGATGCTGAGGGTGC
TTGCCCCTAGTTGGTTCTAATTGGTAAACAGCATTGCCTGTGGCTGGGCA
GAGACAGAGGCGAAACTTTAGATTTCCTAGGCAAGTGAACCAAGGGAAGA
AGAGGAACTTAGTACCTCCATGCTGGAAAAGCAGACCGATCAGGCTTGAG
GACAGAGAGACAGAGAGACTGAAAACATGTCAGAGTCGGGGACTGTGACT
CAGAAAGACTGCAGGCCTGGTTCTGGGGCGGCCAGGATGGAATATAGGTT
TTAGTAAGTGATAATTCAGGAATGTCGGAGGGGAGAGTGTGCTAACAACG
TGGAGGATTGAAGTGGCCTAGCCATTGAGCTGTTTAAAGCATATTTAATA
AAAAGCTGCATGTGTGTGTGTGTCTTTCATTCTAGAATCCAGAACATTGG
GCAGGTGGTGAGGAACACGTGCTGCTGCTGAGGAGAATAGAGCAGATTAA
TCAAATACAGCTACTCTTTCATTCTTTTGTTTTTCTCTCTTTTTGACAAG
GGCTCACATCGTTTAGGCTTTCCCATACTCCATACTTGCTATGTAGCTGA
AAATGGCCTCGAACTTCTGTCTCTACCTCCAAGTACTGGCATTGCAGGCA
TTTGGCACTTTGCTTAGTTGTATGTGGCCCTGGGAATC

Query= MSMg01no471_n04.b1 MSMg01no471_n04.b1 CHROMAT_FILE:
MSMg01no471_n04.b1 PHD_FILE: MSMg01no471_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:13 2005
         (662 letters)



>mm_chr5_4528030_4529095
          Length = 1066

 Score = 1025 bits (530), Expect = 0.0
 Identities = 611/660 (92%), Gaps = 36/660 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaccagggaactatttaaaagttaaggaatctgtcataggtgcatcattacaggaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 187 aaaaccagggaactatttaaaagttaaggaatctgtcataggtgcatcattacaggagca 246

                                                                       
Query: 61  atggaagggatgggaagtttatcaggacacagtgggtgagatagcatgattcaggatggg 120
           |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 247 atggaagggatggggagtttatcaggacacagtgggtgagatagcataattcaggacggg 306

                                                                       
Query: 121 aggaagccactctgttcctgcgttggagaaggaggagaaggccaagatcctcagagctca 180
           |||||||||||| |||||||||||||||||||         |||||||||||||||||||
Sbjct: 307 aggaagccactccgttcctgcgttggagaagg---------ccaagatcctcagagctca 357

                                                                       
Query: 181 ggagtgaggctgcttagggctggggagaaaggctgtggagagagtgatgctggagaagc- 239
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 358 ggagtgaggctgcttagggctggggagaaaggctgtggagggagtgatgctggagaagcc 417

                                                                       
Query: 240 ----------------------aagcctggcttttcctgtctagctactaagcagtcttg 277
                                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctagatggataggatgcggagcaagcctggcttttcctgtctagctactaagcagtcttg 477

                                                                       
Query: 278 gtcaagtgaagcagtgaggttagccacaccataatacagagcaagggaagaacaaaagca 337
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtcaagtgaaacagtgaggttagccacaccataatacagagcaagggaagaacaaaagca 537

                                                                       
Query: 338 tgaaaataaaactgaaacaaatctgagggcaagaaggcactgatgtttcctgtggattgc 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgaaaataaaactgaaacaaatctgagggcaagaaggcactgatgtttcctgtggattgc 597

                                                                       
Query: 398 tgtaagacctgtgtttccaagcattgcttccacattaatcatttgtgtttgtctcttcat 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgtaagacctgtgtttccaagcattgcttccacattaatcatttgtgtttgtctcttcat 657

                                                                       
Query: 458 tgaaatggttatgattcacaatgtcccttccttcagaatcctccctggtcctttcacatt 517
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||
Sbjct: 658 tgaaatggttatgattcacaatgtcccttccttcagaatcctccctggtcccttcttatt 717

                                                                       
Query: 518 tatgtttaactctcctagtaaccagaccccctgtaatgacttcat----acaggcacatt 573
           ||  |||||||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 718 tacatttaactctcctagtaaccagaccccctgtaatgacttcattcatacaggcacatt 777

                                                                       
Query: 574 ggttgttggcatagtcaattggcagagtagaagaaagagcccatgttagaagagctcctc 633
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ggttgttggcatagtcaatcggcagagtagaagaaagagcccatgttagaagagctcctc 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1066
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1056
Effective search space:   688512
Effective search space used:   688512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)