Query= MSMg01no472_g19.b1 MSMg01no472_g19.b1 CHROMAT_FILE:
MSMg01no472_g19.b1 PHD_FILE: MSMg01no472_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:03 2005
(475 letters)
>mm_chr5_97024385_97025260
Length = 876
Score = 874 bits (452), Expect = 0.0
Identities = 470/476 (98%), Gaps = 1/476 (0%)
Strand = Plus / Plus
Query: 1 gggcatcccttgtccccatgaccgactcttgagagtcatctgagatcctttatctttcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 gggcatcccttgtccccatgaccgactcttgagagtcatctgagatcctttatcttttac 260
Query: 61 atctctcctgtctgtccactcttaaataaccttgatgcaacccctaatcatcttgctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctctcctgtctgtccactcttaaataaccttgatgcaacccctaatcatcttgctcca 320
Query: 121 agggcatggatcttccaagtagactgtgactcttccttttcaccccttcaagctgttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggcatggatcttccaagtagactgtgactcttccttttcaccccttcaagctgttttt 380
Query: 181 caaaccgaagccatagggatc-ttcgtttctctaagtgtgtccgtgtttctactgtgctt 239
||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaccgaagccagagggatctttcctttctctaagtgtgtccgtgtttctactgtgctt 440
Query: 240 aagactgtagggcatctcagtacctgccacagggcgaggctaagggtgcccagttgtatt 299
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagactgcagggcctctcagtacctgccacagggcgaggctaagggtgcccagttgtatt 500
Query: 300 tgcatttcagaaaacactcaagtagccatgtcttctggaagatgaaaacctaaacattag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcatttcagaaaacactcaagtagccatgtcttctggaagatgaaaacctaaacattag 560
Query: 360 tgtgcctacaggctcccactgtctaggcccacccactgctcttaagtcatgaaactgcta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgcctacaggctcccactgtctaggcccacccactgctcttaagtcatgaaactgcta 620
Query: 420 attctggacaccacatcgttccatgacctgagccacggtgtgccctttcagtttag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attctggacaccacatcgttccatgacctgagccacggtgtgccctttcagtttag 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space: 402690
Effective search space used: 402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_g19.g1 MSMg01no472_g19.g1 CHROMAT_FILE:
MSMg01no472_g19.g1 PHD_FILE: MSMg01no472_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:03 2005
(444 letters)
>mm_chr5_97201088_97201928
Length = 841
Score = 741 bits (383), Expect = 0.0
Identities = 429/445 (96%), Gaps = 5/445 (1%)
Strand = Plus / Minus
Query: 1 ttaaacaaagaaatggaagcagtgaggatcagctagattggcctacctttctggggcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttaaacaaagaaatggaagcagtgaggatcagctagattggcctacctttctggggcatg 582
Query: 61 tgccgtgcaggccaaggccttctctcctgggtccacccagggctgtgtgggctgcacggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgccgtgcaggccaaggccttctctcctgggtccacccagggctgtgtgggctgcacggt 522
Query: 121 gcacgggatcaggtagatggtgtactcccctgagtagtcctttctggaaacaggcaaagc 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 521 gcacgggatcaggtagatggtgtactcccccgagtagtcctttctggaaacaggcaaagc 462
Query: 181 agactatagtcacctgatgacgacttagctccagacagacatgacttcgtgaagcagggc 240
||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 461 agactgtagtcacctgatgacgacgtagctccagacagacatgactccgtgaagcagggc 402
Query: 241 tcatatggcatttatgccctcacaactctgtaagcgccacttgcaggaactcacccctga 300
||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 401 tcagatggcatttatgccctcac--ctctgtaagcgccacttgcaggaactcatccctga 344
Query: 301 ttattctaacgttcagagtattatccccaaggtgttaatttttttttttcatttactcac 360
|||||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||
Sbjct: 343 ctattctaacgttcagagttttatcccccaggtgttaattttcttttt-catttactcac 285
Query: 361 gtcctttctacgaggaaagctgata-aaaggcccagtgctaatgaaaatcggaagttcgg 419
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 284 gtcctttctacgaggaaagctga-acaaaggcccagtgctaatgaaaatcggaagttcgg 226
Query: 420 gtgatgacaaagagaggtaaggaaa 444
||| |||||||||||||||||||||
Sbjct: 225 gtggtgacaaagagaggtaaggaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 841
Length adjustment: 10
Effective length of query: 434
Effective length of database: 831
Effective search space: 360654
Effective search space used: 360654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
