Query= MSMg01no472_o05.b1 MSMg01no472_o05.b1 CHROMAT_FILE:
MSMg01no472_o05.b1 PHD_FILE: MSMg01no472_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:41 2005
(244 letters)
>mm_chr5_15546249_15546894
Length = 646
Score = 433 bits (224), Expect = e-126
Identities = 240/246 (97%), Gaps = 2/246 (0%)
Strand = Plus / Minus
Query: 1 tcattataagaaccccagaaggcagccttgggtgagaactgtttctgtac--tttttttt 58
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 446 tcattataagaaccccagaaggcagccttgggtgagaactgtttctggactttttttttt 387
Query: 59 ctcaacaagacactattaacaagcatgttcgttcagatatggacatttcttcggagagaa 118
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 386 ctcaacaagacactattaacaagcatgttcgttcagatatggacatgtctttggagagaa 327
Query: 119 gttgctagtctgtgaaggtgggaatagactgatcaagagtttgtttactttttctctcta 178
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttgctaatctgtgaaggtgggaatagactgatcaagagtttgtttactttttctctcta 267
Query: 179 tgtagtattctctttcaagtgccagcctgtatctcataggccatcatactttctcaaagc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtagtattctctttcaagtgccagcctgtatctcataggccatcatactttctcaaagc 207
Query: 239 tgcctt 244
||||||
Sbjct: 206 tgcctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 646
Length adjustment: 9
Effective length of query: 235
Effective length of database: 637
Effective search space: 149695
Effective search space used: 149695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no472_o05.g1 MSMg01no472_o05.g1 CHROMAT_FILE:
MSMg01no472_o05.g1 PHD_FILE: MSMg01no472_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:41 2005
(667 letters)
>mm_chr5_15488797_15489864
Length = 1068
Score = 1245 bits (644), Expect = 0.0
Identities = 662/668 (99%), Gaps = 1/668 (0%)
Strand = Plus / Plus
Query: 1 aattctttggaaag-aaacaatgtatcttgcactaaaaccaaggagattctgaacttgtt 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctttggaaagtaaacaatgtatcttgcactaaaaccaaggagattctgaacttgtt 260
Query: 60 ggtaaagcctgtcctccctataccgtaacagacccacagttacaacagagctgtcagctc 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ggtaaagcctgtcctccctataccgtaacagacacacagttacaacagagctgtcagctc 320
Query: 120 tgttgcacatttattcatcctgagcatccatgagaaacatttctagcaaggagagttgct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttgcacatttattcatcctgagcatccatgagaaacatttctagcaaggagagttgct 380
Query: 180 ggtggaattatggaagtagagatctctatggcagagttcctcctttctctagagatataa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtggaattatggaagtagagatctctatggcagagttcctcctttctctagagatataa 440
Query: 240 ttccttttttttgtaagttaacagtctgtttcctcttgagactctgcgaactttagcctc 299
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccttccatatgtaagttaacagtctgtttcctcttgagactctgcgaactttagcctc 500
Query: 300 agtaaagatggaaggttcttatttacttacttttgacattcagccatgggaaacagaaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtaaagatggaaggttcttatttacttacttttgacattcagccatgggaaacagaaag 560
Query: 360 aaagatgagcaaagcacaggctgacacaagtgtggcccaacgatggcaagtgctccccag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagatgagcaaagcacaggctgacacaagtgtggcccaacgatggcaagtgctccccag 620
Query: 420 atcctttcttgtgtctggaagctcagtcatggtaaacctgggggagggagcctgtgagtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcctttcttgtgtctggaagctcagtcatggtaaacctgggggagggagcctgtgagtg 680
Query: 480 cacacaggagaaagcgtttgtgccgagcctgtcattcagcaggggcacaggcggacagag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacacaggagaaagcgtttgtgccgagcctgtcattcagcaggggcacaggcggacagag 740
Query: 540 cattttaatacattactgtgacttatgttctgtctgtgtccttaattcatttttacatca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cattttaatacattactgtgacttatgttctgtctgtgtccttaattcatttttacatca 800
Query: 600 tgcccaaaggatttttttgtgtggtgtatcaacattctcttcctccttttcctcttcacc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgcccaaaggatttttttgtgtggtgtatcaacattctcttcctccttttcctcttcacc 860
Query: 660 ctctcctt 667
||||||||
Sbjct: 861 ctctcctt 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1068
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1058
Effective search space: 695106
Effective search space used: 695106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
