BAC Information

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BAC

Clone NameMSMg01-474F23
Chromosome5 (Build37)
Map Location 123,867,779 - 123,868,340
singlet/doubletsinglet
Overlap geneMlxip
Upstream geneAnapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a
Downstream geneLOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474F23.T7 (MSMg01no474_f23.b1)MSMg01-474F23.TJ (MSMg01no474_f23.g1)
ACCAG556450AG556451
length715726
length of high quality
(start - end)
569 (77 - 645)565 (76 - 640)
definitionCHROMAT_FILE: MSMg01no474_f23.b1 PHD_FILE: MSMg01no474_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:48 2005CHROMAT_FILE: MSMg01no474_f23.g1 PHD_FILE: MSMg01no474_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGC
GCGGAATTCCCTGTGTTTACANAGCTGGCCTTGAGCTGACAGAGATCCCC
CTGCCTCTGCCTCATTAGTATTGGGATGAGAGGCATATACTGACATGGCT
GGCTAGACTCTGAGGAATATGTATTATACATATATAATTTATACTTATTT
TTGAGAATTTCGTACATGCACATAGTACATTTCTATATTTCCTGTCATCT
CAAGTCCCTCTCAGACCTCCCCTTGTACCCACTTCCCAGGTTCTTGCCCT
CTTTTGTTTTTTTTCTTTTTAAATATTTAACCTACTAAGTGCCATTTGTG
CTGTCAGTATATTCATGGTGTGGGATCTTCCACTGGAGGAATGTGGTCAA
CCTTCCAGAGACCACACCCCTAACCTCCACAGGACTTGAGTACCCCTACT
TTTTCTTGGAAGCAGGGTCTCATGTAGCCCAGTCCAGCCTCAGATTTGCC
TTGAAGCTGAAGATGTTCTCTTCTGCTGTCTCTCCCTCCAACGTCCAACT
GCAGTATCACCCACCGCCTAGGGGTGGGGGCTTGCTGGAGACCGGATCTC
ACAAGTTCAGACTGGCCTGGAGCTCAGTGTACCCGCACTGGCCTTACCCT
TGTGATCTTGCTGCCCTGGTCTCCTGGTATTATAGTGGATGCCAACCAAC
CTTGTTACCGGTTAG
NNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGATCCTCCTGCTTGTGTCTCTCA
AGCCCTGAGATTATAGATACTAGGCACCCTACTCAGTATTACTTAACTTC
TTTGTTTTTTATTTGTTTGCTTTTTGAGACAGGGTTTCTCTGTGTTGCCC
TAGCTGTCCTGGAACTCACTCTGTAGACAAGACAGGTCTCAAACTTGGAG
ATCCACCTGCCTCTGGCTCCCAAGTGCTACACCACTATCACCTGGCAACT
TCTTTATTTTATGGGATGGAAATTATGTTTTGAAGTTAGTAGACTCTCCT
GCCTCAACCTCCCCACATGCTTGGGCCCACAGGCATGTGCCAACACACTT
AGGGTAAGCATTTGGAATCTATTTTTAAGATTTCTCTATGTCCCTTCATC
AAACTATGATGATGATTCCAAAACCTGTCTCTGAGTAACGGCTAGGCCCG
TAGAGAAGGCTGTTTTACATCCCCTCTGCCGCTTAGCTTTGCTGCTATGT
ACTCCACTCCCATCTTTGGGCCTTTGGGGAACTCTCAAAAAAGAGAAGCA
CCTTTAACTTGCCTGTCTGAGATAAAAGTCTTGAATACAGATTTTCCCAC
AATGCACTTTCTCCTTACCTGTTCAGAAACCCAGGTGTGATATACTGCTC
CTGAAAAGCGAGGAATTCCCTTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_f23.g1 MSMg01no474_f23.g1 CHROMAT_FILE:
MSMg01no474_f23.g1 PHD_FILE: MSMg01no474_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:48 2005
         (565 letters)



>mm_chr5_123867376_123868340
          Length = 965

 Score = 1025 bits (530), Expect = 0.0
 Identities = 554/562 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   atcctcctgcttgtgtctctcaagccctgagattatagatactaggcaccctactcagta 63
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 965 atcctcctgcttgtgtctctcaagccctgagattatagatacaaggcaccctactcagta 906

                                                                       
Query: 64  ttacttaacttctttgttttttatttgtttgctttttgagacagggtttctctgtgttgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ttacttaacttctttgttttttatttgtttgctttttgagacagggtttctctgtgttgc 846

                                                                       
Query: 124 cctagctgtcctggaactcactctgtagacaagacaggtctcaaacttggagatccacct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 cctagctgtcctggaactcactctgtagacaagacaggtctcaaacttggagatccacct 786

                                                                       
Query: 184 gcctctggctcccaagtgctacaccactatcacctggcaacttctttattttatgggatg 243
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 785 gcctctggctcccaagtgctacaccactaccacctggcaacttctttattttatgggatg 726

                                                                       
Query: 244 gaaattatgttttgaagttagtagactctcctgcctcaacctccccacatgcttgggccc 303
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaaataaggttttgaagttagtagactctcctgcctcaacctccccacatgcttgggccc 666

                                                                       
Query: 304 acaggcatgtgccaacacacttagggtaagcatttggaatctatttttaagatttctcta 363
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 665 acaggcatgtgccaacacacctagggtaagcatttggaatctatttttaagatttctcta 606

                                                                       
Query: 364 tgtcccttcatcaaactatgatgatgattccaaaacctgtctctgagtaacggctaggcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgtcccttcatcaaactatgatgatgattccaaaacctgtctctgagtaacggctaggcc 546

                                                                       
Query: 424 cgtagagaaggctgttttacatcccctctgccgcttagctttgctgctatgtactccact 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtagagaaggctgttttacatcccctctgccgcttagctttgctgctatgtactccact 486

                                                                       
Query: 484 cccatctttgggcctttggggaactctcaaaaaagagaagcacctttaacttgcctgtct 543
           |||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 485 cccacctttgggcctttggggaactctgaaaaaagagaagcacctttaacttggctgtct 426

                                 
Query: 544 gagataaaagtcttgaatacag 565
           ||||||||||||||||||||||
Sbjct: 425 gagataaaagtcttgaatacag 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)