BAC Information

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BAC

Clone NameMSMg01-474L12
Chromosome5 (Build37)
Map Location 42,265,305 - 42,265,537
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
Downstream geneLOC100040588, EG636612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474L12.T7 (MSMg01no474_l12.b1)MSMg01-474L12.TJ (MSMg01no474_l12.g1)
ACCAG556714AG556715
length729754
length of high quality
(start - end)
547 (48 - 594)233 (73 - 305)
definitionCHROMAT_FILE: MSMg01no474_l12.b1 PHD_FILE: MSMg01no474_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:16 2005CHROMAT_FILE: MSMg01no474_l12.g1 PHD_FILE: MSMg01no474_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCAATXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGCACCGCG
GAATTCCAAGATTCCCCGAATTCACCAATATCTTTCCACAAATCCAGCCC
TTCAAAGGATAATAAAGGGAAAACACCAGTTCAAGGACAGAAATGGCACC
CTAGAAAAAGCAAGAAAGTAATCCTTCAACAAACCTAAAAGAAGATAGCC
ACAAGAACAGAATGCCAACTCTAACAACAAAAATAATAGGAAGCAACAAT
TACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCCAATAA
AAAGACATTGACTGACAGACTTGCTACATAAACAGGACCCAACATTTTGC
TGCTTACAGGAAACCCACCTCAGAGACAAAGACAGAGATTACCTCAGAGT
AAAAGACTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTA
GAGTAGCCATTCTAATATCAAATAAAATCGGTTTCCAAGTAAAAGTTATC
AAAAAGGACAAGGAGGGGCACTTCATTCTCATCAAAGGTAAAGTCTTCCA
AGATGAACTCTCAATTCTGAATATTTATGCTCCCAATGGAAGATCATCCA
CATTCATTACAGAAACTTTAGTAAAGCTCACAGCACACTTTGCACTTCAT
TGCATAATAGGAGGAGACTTAAATTCCTCCATCTCATCAATTGAAAGTAT
CCTGGAAACCGAAACTTTTCATAGGAGAA
NCCGATGATAGGGGAGGCCTGGNGGNCGCCTGGTACTTATCTTCAGGTGA
ACTATAGATTTTCCAACAACATTCCTTGTGCAGCTGATGGTGAGCTTTAG
CTGCTGATACTCCTTTCTTCATGGCTCTACTGCCATGACTACACATGTGT
GCTGTAATCACACATGGCTGGTTATGTCTGTTTCCTTGGGTCAAATATAT
ATTGACTAGCCACCATTGATGGAGTGTGACCTGCCAAGTAGACTTTTTTG
TGTTTTAACTTGGCTGAGCTGGATATGATCTAGGCATTGGCATTACTTTC
CAAAGNAATTGCGTGNCNTTNTNNCCNNANNATTATTATTAATTTATTAT
TATTATTATCACCATTATTATTATTAGTAGATGNNNGGCGCCCCTTTTGC
CCGTCCTTTGTCCCCCCCCCCCTTGTTTTTCCTCTTTCTTACCTACTCTT
CCTTTTCTTTGATCTCCTCCTTACTGACTACCCTTATATTCCTTTTCTCC
ATTTCTCTTTTCCTCCCCTTCCTCATTTTACTCTTCTCTCCTTCTTGTTC
TTCTCATACTATCCCCCCTCTTTTTCCCTCTTTTTTCTTCTCCTTTTCCT
CTTTCTCTTCTCCTTCTCTCTCCTCTTCCTTCCATCTCTCTCCCCCATTG
CAACGCACTTTTTTTTTTTTTTCTCATCTTAACCATCTTTCACCCATTTT
GATTCTTCCTCATCCCCCTCCTTCTTCCCATCTTCTTTTTTCTCTTCGAT
TTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_l12.g1 MSMg01no474_l12.g1 CHROMAT_FILE:
MSMg01no474_l12.g1 PHD_FILE: MSMg01no474_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:16 2005
         (233 letters)



>mm_chr5_42265105_42265737
          Length = 633

 Score =  397 bits (205), Expect = e-115
 Identities = 226/237 (95%), Gaps = 8/237 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttgtgcagctgatggtgagctttagctgctgatactcctttcttcatggctctactg 60
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 201 tccttgtgcagctgatggtgagctttagctgctgatactcctgccttcatggctctactg 260

                                                                       
Query: 61  ccatgactacacatgtgtgctgtaatcacacatggctggttatgtctgtttccttgggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatgactacacatgtgtgctgtaatcacacatggctggttatgtctgtttccttgggtc 320

                                                                       
Query: 121 aaatatatattgactagccaccattgatggagtgtgacctgccaagtagac----ttttt 176
           |||||||||||||||||||||||||||||||||||||||||||||||||||    ||   
Sbjct: 321 aaatatatattgactagccaccattgatggagtgtgacctgccaagtagacaaactt--- 377

                                                                    
Query: 177 tgtgttttaacttggctgagctggatatgatctaggcattggcattactttccaaag 233
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 -gggttttaacttggctgagctggatatgatctaggcattggcattactttccaaag 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)