BAC Information

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BAC

Clone NameMSMg01-475D10
Chromosome5 (Build37)
Map Location 134,926,479 - 135,098,164
singlet/doubletdoublet
Overlap geneGtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h
Upstream geneLOC100039731, LOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424
Downstream geneLOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475D10.T7 (MSMg01no475_d10.b1)MSMg01-475D10.TJ (MSMg01no475_d10.g1)
ACCAG557092AG557093
length784756
length of high quality
(start - end)
241 (44 - 284)279 (81 - 359)
definitionCHROMAT_FILE: MSMg01no475_d10.b1 PHD_FILE: MSMg01no475_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:55 2005CHROMAT_FILE: MSMg01no475_d10.g1 PHD_FILE: MSMg01no475_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,097,924 - 135,098,164)(134,926,479 - 134,926,757)
sequence
AATACCGCACCTGCGCGGNAATCCCCAGGGTGACAAAAACATGGCTTAAC
AGATTGCTTCCCTGGCATAAGGCCTGGCTCCCATCCCAAATGTGTTCTCA
CCCAGCAAATGCAGGGGGTTTTGTACGCTTTACTTTTGGAAAGTTTCCAG
ATACTAGACAAACATGACATTGAAGAATCAATTTGTAGAGCATTGTGCAT
CTCTGTTGATGTGACGGTGTTTTCAGTTTTTGACTCTGTCTTCTTTCCTA
GGCTACAGGGATGACTTCTTAGGGGGTAGGGGGGTTAGNCTCCCTTTCCC
CCGCCGAGCACGCCCCCCAACGCCTCTTTTTTTTTCTACTTGCCCCTCTT
TTCGTTTCGGCTCCTACACTCACTTCTTACAACCCCCCCCAACTTTATTT
TTCTCATCTTTGACCACCCCTCTGCCTTGTTACCCCAAATTTCTTTTCAT
TTTTGCCCTTGCATCTTTACTAACCTCTCTTTTCTTTCTCTCTCCCAATT
TCTATCCCCCCACTTTTTTCTCCTAACCCTCTTTTCTACTCCCACCCCTC
ACTCATTACTTCTCTATACCCCCTCATTCCTCCTCCCCCGTTCTTCCTTT
TCTCCCTACCTCATCCTTCCATACTACTCCTTCCCCAACTTATCCCCTCT
TCTAACCGCACTCCCTCATTTTTTTTTCTTTTTCTCTACCCTTGCCTTTT
CCTCATTAAAACAACTCCTCTTCCCTCCATCTCTCCTCTACTTAAACCCT
TCTGTACATTTTACTACCTTCCCCTTTTCTCTTG
TTCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCCCAAGACTCATGTGAA
GGAGAGAAACCATTCCTGAAATGTAGCCTCTGAACTTTATACAAGCACCT
TGGTGCACTTGCCCGAGATGCACACGCAATAATAATTAAAGCAGGGTGTG
GCGGGCGCCTGTAATCCCAGCTCTGAGGAAACAGAAGTAGGCAGATTCCC
AGGGCTTACTGGTTAGTCAGCCAAACTTACATGGCAAGTTCTAGGCCAAT
GAGAGACCCTGTCTCAAAAGTCAAGGCGAAGAAGCTAGAGGAATGGCTCG
GTAGCTAAGAGCACACACGGAATATACAGAGGACCCCGAGTTTAGTTCCC
AGAACCTATGGCAGGTGGCTCGCAACCACCTGCAACTCCAGTGCCAGGAG
ATCCATTCCCTCTGTCTCCCACAGGCCCTCTCTTGACCGTGTATATACTG
CATACACACACATCCTCCCCCTAAATATCACATCCACCCCACCCCCCTTA
CCCCTTGGTCTCACTTACCTTTACCATCCCCGCCTGCCTCCTTTCTATCC
ACCCCACCTCCCTCTATCCGTTTTTCTCTCCTTCCCTCCTCCTTTTCCTC
CCCTTTTTCCCTTTTACCTCTCCTTCCTCCCCTCCCCCTTTCTTTTTTCT
CCCCCTTCCCCCTTTTTTTTCTCTTTTCCCTCGCCTTTCCTCCCCTCTCC
CACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_d10.b1 MSMg01no475_d10.b1 CHROMAT_FILE:
MSMg01no475_d10.b1 PHD_FILE: MSMg01no475_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:55 2005
         (241 letters)



>mm_chr5_135097724_135098364
          Length = 641

 Score =  435 bits (225), Expect = e-126
 Identities = 237/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcttaacagattgcttccctggcataaggcctggctcccatcccaaatgtgttctcaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttaacagattgcttccctggcataaggcctggctcccatcccaaatgtgttctcaccc 382

                                                                       
Query: 61  agcaaatgcagggggttttgtacgctttacttttggaaagtttccagatactagacaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaaatgcagggggttttgtacgctttacttttggaaagtttccagatactagacaaac 322

                                                                       
Query: 121 atgacattgaagaatcaatttgtagagcattgtgcatctctgttgatgtgacggtgtttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   
Sbjct: 321 atgacattgaagaatcaatttgtagagcattgtgcatctctgttgatgtgacagtgtaaa 262

                                                                       
Query: 181 cagtttttgactctgtcttctttcctaggctacagggatgacttcttagggggtaggggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtttttgactctgtcttctttcctaggctacagggatgacttcttagggggtaggggg 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no475_d10.g1 MSMg01no475_d10.g1 CHROMAT_FILE:
MSMg01no475_d10.g1 PHD_FILE: MSMg01no475_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:55 2005
         (279 letters)



>mm_chr5_134926279_134926957
          Length = 679

 Score =  540 bits (279), Expect = e-158
 Identities = 279/279 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccccaagactcatgtgaaggagagaaaccattcctgaaatgtagcctctgaactttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccccaagactcatgtgaaggagagaaaccattcctgaaatgtagcctctgaactttat 260

                                                                       
Query: 61  acaagcaccttggtgcacttgcccgagatgcacacgcaataataattaaagcagggtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagcaccttggtgcacttgcccgagatgcacacgcaataataattaaagcagggtgtg 320

                                                                       
Query: 121 gcgggcgcctgtaatcccagctctgaggaaacagaagtaggcagattcccagggcttact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgggcgcctgtaatcccagctctgaggaaacagaagtaggcagattcccagggcttact 380

                                                                       
Query: 181 ggttagtcagccaaacttacatggcaagttctaggccaatgagagaccctgtctcaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttagtcagccaaacttacatggcaagttctaggccaatgagagaccctgtctcaaaag 440

                                                  
Query: 241 tcaaggcgaagaagctagaggaatggctcggtagctaag 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaggcgaagaagctagaggaatggctcggtagctaag 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)