BAC Information

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BAC

Clone NameMSMg01-475H23
Chromosome5 (Build37)
Map Location 81,213,271 - 81,213,632
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475H23.T7 (MSMg01no475_h23.b1)MSMg01-475H23.TJ (MSMg01no475_h23.g1)
ACCAG557310AG557311
length1,612791
length of high quality
(start - end)
---353 (79 - 431)
definitionCHROMAT_FILE: MSMg01no475_h23.b1 PHD_FILE: MSMg01no475_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:18 2005CHROMAT_FILE: MSMg01no475_h23.g1 PHD_FILE: MSMg01no475_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCCTATATCCCTTCGTAGTCCTACCGTGGGCGCGACTTGTATGGCGACG
CGCTGATTGGTATTTCCAACGAGTAACAGCGGCGGCGCACAGTTATGTTA
TTTGAGCTTCTTCCCCATAATACNACACTGTCTCCACACCACTCAGTCGA
CCAGAGCCGAGTAAGCGCGGCCACGAGCATCGAGATGATAGTTAGACCTA
TTGCGCAACGACGGCACTGGGTANCNACGTGAGATATGTCAATATAACGA
CGCGATCGCCACGTATGATCGACTCGTAATATGCGCCGACATTAATTGAG
AAGGGATGGTGCCGTCCATAGCAAGTAGACTTCACTCTGAGCGGTACTCT
ATCACCAGGGTTTGTTGATATGTACTTAGTCCTGGCGCTTGCTGAAATGT
TCTGTGATACCATGTCTGCGCTGACGCTAGTGGTAGCTAGCTCCATGTGA
TGGATATCGCACTACAAGCTNCGGCGGATGCTCACCGTCGAGATATCATT
GCGATGTACTCCGAGCGTCTCACTGCGTGTCGTGCTACTGTGCAATCGTA
TATACTATATCGCGAGTCACTCTCCGACGATCCGCTGTTTACGCCTCCAN
GCGCTACTCACACATTAATGATGCGCTCTTCACTCATCTCGCTTACGCGC
GCTCCACTCCGTNCATATGTATGTATGTNCACTCTATTGTGGTGGGCGAA
GTATCTCNGCGCAGAAGAGATATACCGTAATCGCTCGTGTATGTAGAACC
ACATCAACGCGATNTTCACGCAACACGCGACTCGCAATCATATATATATA
CGTATGCAGANGTGAATGCTTACGTGCGCTGTCGCATGTTCTGTATGAGT
AGTACAGACTAGACGAGATGATACTCACCGAGATCTAGATACTCATCTAC
TCAACGNTTTGACGCATATGNCTTATGAACGTTATTACGCTGTGGCATAT
CTATGCACGAGTGCGTCTTGCTATCTATTCACATAATATATAACGTGCGT
ACGTAGCAGATGCACACTGATCGTCTCATNGTCTGCGTACTACTACTCCG
TGACCGTGTGTGCGCCGACGCTCGCGCCGCATCGCCTATTTGTATCACAG
AGCCGCTTCTTCATCGCGCGTGCATCACCTGACAGAGCGCTACGCACCAG
GATATGATCACGGTGCCTACAGCGANCCCGACGTACTCGCCGTCTATCTG
TCGCGGACGNCGCGCAGATATCGTGTCTCATTGCCTCATCGTATTGTGAT
GTCTACCCCACTCACTTACTGTGTATTNTNGTATGTTGCGACACGAGCAC
AGCTGCGCTCACTATGTATATGAATGCGCGTCGTGACTCAANATACGACT
GATCTACATCTTGACCNANCTCGNCCGACGATCTATAGATNTGTATACNC
NCACAGGCGGTATATCGCACCTGATGTGTGGTNTGTCGTCTTACGCTGCG
ATATTAATTATATCTCGCTCATACGAACGCATNATCTCATTCGATCGCGC
TGATGTTCTCATATCATATTCGACGCACTGCTGTATACTATCACGCGGCA
CGACGTTCGTCGCGTCTCTATGTCGCAGCTCTCTGTGAGTCGTTACTCAC
GTATGCGTGGCG
NNCCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCCCATCGACTTTATTTTTA
TTTTCCTAAGATCTTTTTTTTTTTCACACCATGGGAAAACAATGTGCTGA
CTTTAAATTAGAAAGTTTACTTTCATTTCTTGGTAGTGATAGAAATGCAG
TGTTTCTAGTTTCTTGGAAATTGATGCCTCCTGTGCTACTATGTCTACCT
TTGATTTCTATTTGTCTGTGAAGATGATATTAGAAGGGAGTGCCTGGATT
TTTCAATGAGTGGCCTCACATTTAATTCTAGGTATAGTGGGAATGAATTT
TGTCCCACTGAAGCACATGTAATGTGTTGCTACTTGTTAGGTACACATTC
GACTCATCCTTAACTCATACCCGATATGCGTTCCAGATTCATCATGCTAG
CCTCCTAATCTTCTTCTTCCCACAAACACAAATTGAACTCCTCATGGGAC
AACACCTCCCACTCCTTAGGGTTGCAGGATTTTTGGCATACATTTTTTTC
ACGACTTCGTTGAAAAGAACATTTCAGGCCTTTCCTCCCCCTCTTGGTAC
CCTTTTCCCCCATATACGCTCACACTTTCTCCGGTTCTCTTGCCCCCCCG
TTTTCCCCCCCCCCTCTTGCCTCTACATCTACACATTTCTTTTCCCCCTT
TTTCCCCCTTTTCTCCTTCCCTATCTCTTTCTTCTCGCTCTCTTCTCCCA
TTCCCGTTTCCCCTACTCCCCACCCTTCCCCTTCTTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_h23.g1 MSMg01no475_h23.g1 CHROMAT_FILE:
MSMg01no475_h23.g1 PHD_FILE: MSMg01no475_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:18 2005
         (353 letters)



>mm_chr5_81213036_81213789
          Length = 754

 Score =  646 bits (334), Expect = 0.0
 Identities = 350/362 (96%), Gaps = 12/362 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccccatcgactttatttttattttcctaagat-cttttttttttt-----------ca 48
           |||||||||||||||||||||||||||||||||| ||||||||||||           ||
Sbjct: 597 atccccatcgactttatttttattttcctaagatcctttttttttttttttttttttcca 538

                                                                       
Query: 49  caccatgggaaaacaatgtgctgactttaaattagaaagtttactttcatttcttggtag 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 caccatgggaaaacaatgtgctgactttaaattagaaagtttactttcatttcttggtag 478

                                                                       
Query: 109 tgatagaaatgcagtgtttctagtttcttggaaattgatgcctcctgtgctactatgtct 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgatagaaatgcagtgtttctagtttcttggaaattgatgcctcctgtgctactatgtct 418

                                                                       
Query: 169 acctttgatttctatttgtctgtgaagatgatattagaagggagtgcctggatttttcaa 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 acctttgatttctatttgtctgtgaagatgatattagaagggagtgcctggatttttcaa 358

                                                                       
Query: 229 tgagtggcctcacatttaattctaggtatagtgggaatgaattttgtcccactgaagcac 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgagtggcctcacatttaattctaggtatagtgggaatgaattttgtcccactgaagcac 298

                                                                       
Query: 289 atgtaatgtgttgctacttgttaggtacacattcgactcatccttaactcatacccgata 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 atgtaatgtgttgctacttgttaggtacacattcgactcatccttaactcatacccgata 238

             
Query: 349 tg 350
           ||
Sbjct: 237 tg 236


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 754
Length adjustment: 9
Effective length of query: 344
Effective length of database: 745
Effective search space:   256280
Effective search space used:   256280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)