Query= MSMg01no475_k20.b1 MSMg01no475_k20.b1 CHROMAT_FILE:
MSMg01no475_k20.b1 PHD_FILE: MSMg01no475_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:32 2005
(511 letters)
>mm_chr5_4763789_4764699
Length = 911
Score = 953 bits (493), Expect = 0.0
Identities = 502/505 (99%)
Strand = Plus / Minus
Query: 7 gaattctttactctatatcgtctagtaaagtacagctaagccagtgtcttcctcatacca 66
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattctttactctaaattgtctagtaaagtacagctaagccagtgtcttcctcatacca 652
Query: 67 gccagatgcaaatttcaagatatgcacacacacacccttcacttttaatcataatttcaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gccagatgcaaatttcaagatatgcacacacacacccttcacttttaatcataatttcaa 592
Query: 127 cattccaagaatttgtaccaacagcaaaatcttgtttgatagtttcacctgtctgttcca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cattccaagaatttgtaccaacagcaaaatcttgtttgatagtttcacctgtctgttcca 532
Query: 187 ggaacattcgaaggaattattggcttactttgtcggtgaaaatatactatgatttttttg 246
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 531 ggaacattcgaaggaattattggcttactttgtcggtgaaagtatactatgatttttttg 472
Query: 247 tcctttcatattctctatcctcaaatgtcctgtgatgtttgtgtagaagattcacattta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tcctttcatattctctatcctcaaatgtcctgtgatgtttgtgtagaagattcacattta 412
Query: 307 tacctaagtaatatagccatctatactgaatctatcttaccatatttaaaatgtaaataa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tacctaagtaatatagccatctatactgaatctatcttaccatatttaaaatgtaaataa 352
Query: 367 ttatggctgacttagataataagttgatttaagatctcactatgaatcagctatgagcac 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttatggctgacttagataataagttgatttaagatctcactatgaatcagctatgagcac 292
Query: 427 tatggggtaaacactgtgacaatctcctttgttttatcttaattttattaacaggcctca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tatggggtaaacactgtgacaatctcctttgttttatcttaattttattaacaggcctca 232
Query: 487 gatgcatgtagtgggttttaactat 511
|||||||||||||||||||||||||
Sbjct: 231 gatgcatgtagtgggttttaactat 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_k20.g1 MSMg01no475_k20.g1 CHROMAT_FILE:
MSMg01no475_k20.g1 PHD_FILE: MSMg01no475_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:32 2005
(430 letters)
>mm_chr5_4579306_4580135
Length = 830
Score = 824 bits (426), Expect = 0.0
Identities = 429/430 (99%)
Strand = Plus / Plus
Query: 1 aaaacacaaatttaactcatctcttcaccaacacatttcagacaacaagacaaatgctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacacaaatttaactcatctcttcaccaacacatttcagacaacaagacaaatgctag 260
Query: 61 aggaagcccccgagagctccccagcttaagaagagccgacatcttgactgcagggatggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaagcccccgagagctccccagcttaagaagagccgacatcttgactgcagggatggg 320
Query: 121 gctgcccataagactgcttggtaatgacttcaaccaaaaacagaaggatgtacaagacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgcccataagactgcttggtaatgacttcaaccaaaaacagaaggatgtacaagacac 380
Query: 181 gtgacacagatagcaagacacactgttcaaagaccaatcaatatggggcagaagcaccga 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gtgacacagatagcaagacacactgttcaaagaccaaccaatatggggcagaagcaccga 440
Query: 241 gcgtccacaccacagcacggagggtgtggcctagtccatgccacatgaggttgtagagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcgtccacaccacagcacggagggtgtggcctagtccatgccacatgaggttgtagagca 500
Query: 301 caggctccatgcctcacaccagcccatggtgatttcttacagatatttactaagcacatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggctccatgcctcacaccagcccatggtgatttcttacagatatttactaagcacatg 560
Query: 361 gcatatagaacattaaaaggctttggaaaaatccctcagttttcaacttctgaaggatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatatagaacattaaaaggctttggaaaaatccctcagttttcaacttctgaaggatta 620
Query: 421 ttaacttcaa 430
||||||||||
Sbjct: 621 ttaacttcaa 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
