BAC Information

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BAC

Clone NameMSMg01-475M21
Chromosome5 (Build37)
Map Location 107,783,780 - 107,783,969
singlet/doubletsinglet
Overlap geneBrdt
Upstream gene4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518
Downstream geneLOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475M21.T7 (MSMg01no475_m21.b1)MSMg01-475M21.TJ (MSMg01no475_m21.g1)
ACCAG557545AG557546
length778776
length of high quality
(start - end)
517 (70 - 586)225 (72 - 296)
definitionCHROMAT_FILE: MSMg01no475_m21.b1 PHD_FILE: MSMg01no475_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:42 2005CHROMAT_FILE: MSMg01no475_m21.g1 PHD_FILE: MSMg01no475_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATCCGCGGAA
TTCTCACCTGATTTACACCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCTAAACAACACTGAGATTCC
ACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAGCTGATACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACCGGATTTTTTTGCAATACCTCTCCTGGGCATA
TATCCGGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTATGTT
CATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAG
TACTACTCAGCTATTAAAAAAAATGAATTTATGAAATTCCTAGGCAAATG
GATGGACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCGCAAAGGA
ACTCACACAATATGTACTCACTGATAAGCGGATATTAACCCCCCAAACTT
AGGATACCCCACATATTATATATTTCTTGTCCAACGCATGAAATTCACGA
AAAACGAAGACCAATGTGTGGCCACTTTTCCCCTTCCCTATAAATGGGCA
AAAAAAACCCCCTATTAGGAGTTCCCCA
NNCCCATGATGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGTGGCTAAGGAGCATTACACTCTTTTG
GGAGAAGTTTCTTGCTTTCTCGTGGTTTTGGGAGAGTGTGGGTTTCTGTG
TGTTGTGTTGTGTACATCTGTTTGTGTGCGTTGTGTTGTGATGTATACAT
CTGTTTGTGTACATCTCTCCTGGTTTAATTTGTTTGTTTGTTTTCTTAGT
GAACAGTTTGCTCTTTAGGGCTCAATTCCATTCTCTGAACACCACTAAAA
CAGGAGAAATTTTTTTTTATTTACTAGATATAGAAGTACAGTGAAAACTG
GTTTATTGTCACTACTATACCATTCATAGTCGGAAAACCTAAAATGGTAC
ATCTCCATTGTTTACCACCACGTTTATTTTGTTTTTCTTCTAATGATTGA
ATCCTTGTACTCTTACCCCAACTAGATGTATCTCCTCCTTTCTTTCTTCC
CTTACTACCCACTCTCTTCTTTTTTTTCCCTGACATTATCCTTTTATTTT
TCCCCTTTCCTCCCTTTTCCTTTTCTTTTTTCCTTCTTTCCCTTGCCTTT
TCTTTTTTTTTCATCATCTTCTCCTTTTTCATTCCTTTCCTCCTTCTCCC
CTTCTTTCTCTCTCCCTCCCCCCTCCCCCTTTTTCTTTCCTACCTCTTCT
TACTTCTCCCCAACGCCCAAATTCTTCTCCCTCCTCCACCATCTCCTTTC
CTTTACATCCTTCTTTCCTCCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_m21.g1 MSMg01no475_m21.g1 CHROMAT_FILE:
MSMg01no475_m21.g1 PHD_FILE: MSMg01no475_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:42 2005
         (225 letters)



>mm_chr5_107783580_107784202
          Length = 623

 Score =  252 bits (130), Expect = 2e-71
 Identities = 185/226 (81%), Gaps = 37/226 (16%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtggctaaggagcattacactcttttgggagaagttt-cttgctttctcgtggttttg 59
           |||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||
Sbjct: 201 cagtggctaaggagcattacactcttttg---taagtttccttgctttctcgtggttttg 257

                                                                       
Query: 60  ggagagtgtgggtttctgtgtgttgtgttgtgtacatctgtttgtgtgcgttgtgttgtg 119
           ||||||||||||||||||||||||||||||||                            
Sbjct: 258 ggagagtgtgggtttctgtgtgttgtgttgtg---------------------------- 289

                                                                       
Query: 120 atgtatacatctgtttgtgtacatctctcctggtttaatttgtttgtttgttttcttagt 179
                ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 290 -----tacatctgtttgtgtacatctctcccggtttaatttgtttgtttgttttcttagt 344

                                                         
Query: 180 gaacagtttgctctttagggctcaattccattctctgaacaccact 225
           ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 345 gaatagtttgctctttagggctcaattccattcactgaacaccact 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 623
Length adjustment: 9
Effective length of query: 216
Effective length of database: 614
Effective search space:   132624
Effective search space used:   132624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)