Query= MSMg01no475_o01.b1 MSMg01no475_o01.b1 CHROMAT_FILE:
MSMg01no475_o01.b1 PHD_FILE: MSMg01no475_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:48 2005
(286 letters)
>mm_chr5_140760337_140761023
Length = 687
Score = 485 bits (251), Expect = e-141
Identities = 278/289 (96%), Gaps = 5/289 (1%)
Strand = Plus / Minus
Query: 1 gctgcaatgcccttccattctctaccctgcctttgtgatacttgagctcttacatgaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gctgcaatgcccttccattctctaccctgcctttgtgatacttgagctcttacatgaata 428
Query: 61 aagagccctgaccacccctaaacgcagagctaccttgcatccgggcaggttgagcttagg 120
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 427 aagagccctgaccacccccaaatgcagagctaccttgcatccgggcaggttgagcttagg 368
Query: 121 tcttcatttacatcttgccccacacacagccaaccactgtgctctgctgcctgcatctct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcttcatttacatcttgccccacacacagccaaccactgtgctctgctgcctgcatctca 308
Query: 181 ttgagggaattggactctgagctcccatataagcatcggctttgagtccatggctcaaac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtgagggaattggactctgagctcccatataagcatcggctttgagtccatggctcaaac 248
Query: 241 tctt---ttggttttcccagagcaggctgcctgctgggacaggacctga 286
|||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct: 247 tcttcagt--gttcacccagagcaggctgcctgctgggacaggacctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space: 187806
Effective search space used: 187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no475_o01.g1 MSMg01no475_o01.g1 CHROMAT_FILE:
MSMg01no475_o01.g1 PHD_FILE: MSMg01no475_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:48 2005
(525 letters)
>mm_chr5_140635195_140636118
Length = 924
Score = 992 bits (513), Expect = 0.0
Identities = 522/525 (99%), Gaps = 1/525 (0%)
Strand = Plus / Plus
Query: 1 aacaattcaagagcttaagacccagcaagtagttttaaattaagaattttatttacaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaattcaagagcttaagacccagcaagtagttttaaattaagaattttatttacaact 260
Query: 61 cattggttaaattaaagggaaaaaaaaatcacaattgaaacagataaacttccaaactct 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattggttaaattaaaggg-aaaaaaaatcacaattgaaacagataaacttccaaactct 319
Query: 121 ttcagggtttgagttgcaagtgtcaccaaaggtccatgtatagaaggaaggcttggtggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttcagggtttgagttgcaagtgtcaccaaaggtccatgtatagaaggaaggcttggtggc 379
Query: 181 cagtctgctgtgctacttggagctagctggccttttaggaggtagggccaatgaaaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagtctgctgtgctacttggagctagctggccttttaggaggtagggccaatgaaaagaa 439
Query: 241 gtgaggtccctgggggtatgacgtgaaggacactgttgaatgccaggctcttccttttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtgaggtccctgggggtatgacgtgaaggacactgttgaatgccaggctcttccttttca 499
Query: 301 actcttggcttcagggcctgaaggtgaatggcttggattcaccacctgcttgcccaagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 actcttggcttcagggcctgaaggtgaatggcttggattcaccacctgcttgcccaagat 559
Query: 361 gtctggactggccacaatctatagccataatctgttacagcatagaactaccaaacaagc 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtctggactggccacaatctaaagccataatctgttacagcatagaactaccaaacaagc 619
Query: 421 attttcctcttcataaggacaatcttggcaatctgttatcatgatggaaggctgcttaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attttcctcttcataaggacaatcttggcaatctgttatcatgatggaaggctgcttaat 679
Query: 481 acaatgagaaaaatgtaatatatcaaacacacagcatgcaactaa 525
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 680 acaatgagaaaaatgtaatatatcaaacgcacagcatgcaactaa 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space: 470710
Effective search space used: 470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
