BAC Information

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BAC

Clone NameMSMg01-476C01
Chromosome5 (Build37)
Map Location 57,117,679 - 57,118,252
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476C01.T7 (MSMg01no476_c01.b1)MSMg01-476C01.TJ (MSMg01no476_c01.g1)
ACCAG557792AG557793
length752732
length of high quality
(start - end)
280 (42 - 321)577 (81 - 657)
definitionCHROMAT_FILE: MSMg01no476_c01.b1 PHD_FILE: MSMg01no476_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:08 2005CHROMAT_FILE: MSMg01no476_c01.g1 PHD_FILE: MSMg01no476_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCTCCTCTGTACAAACAGACTGGGAGGAAGAAGCAGCTCATTATGA
GAAAAAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAGC
CAAAAGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCGG
TTTCAAGGTCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCA
ATGCGCAGAGAGGCAATGCGCAGAGAGGCAATGCGCAGAGAGGCAATGCG
CAGAGAGGCAGTGCGCAGAGAGATTTTGTGCAGAGAGGCAATGCGCAGAC
TCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACAGGCATTTCCAGT
CTTTGAAGGAGCCGAGGGTGGGCGTGTCCATGCTCCGGTAGAATATGTAC
AGATTAAAGAACTTGCCGAGTCGGTCCGTAAATACGGAACCAATGCTAAT
TTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATGGCACTAACTCCTGC
CGACTGGCAAACGGTTGTAAAAGCCGCTCTCCCTAGTATGGGCAAATATA
TGGAATGGAGATCTCTTTGGCATGAAGCTGCACAAGCGCAGGCCCGAGCA
AACGCAGCTGCTTTGACTCTAGAGTAGAGAGATTGCACTTTTGACTTGTT
ATACGGTCAGGTAGCTTATTCTGCTGATTAGACAACCTACTCTGGGCAGT
TT
GCGGGCGAATGAAGGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCATATCTACAGAAGGAA
AATATCTTACTTTAAGATGCTATTCATTAGAAATTGTGTTCCAATAAAGC
TCAATTTATATCCAGTTAATTATTTTTAGGCATAACTAGTCCATCTTCTT
GGGCAACAGGAATCCACGTAGTGGCAATTCTTTTTGATTAGTCTATGAGT
AGCACCTATATTATTGCTTTCTCTCTTTTTATACTTTTTCTTCAAGGAAC
TCCATTTTTATATTACAACTACAGTTGTTTAATTAAGTCTGAACTGGGGC
ATAATTTTGTTAAATAGCATACTTACTATTGGTCAAAAAATCACATTATG
TTGATGTGATTTTCATTCATGACTAATTATTACAACATAGTTATAAGTTG
AGAGAATTATGCTATTAAATGATATTGGTATTTATGGTAAAAAATTAACA
TACAATTTTCCATTTATACTACAATTCATTCTTTAAAAAAGTCCTAATGC
TGGATAATTATTTTTTCATTAAGTAGAAGAATTAAAATATAATTCTTTCT
ATATCACACTATCTGCTACTTCAAAGTACAAAATTGAAGTAAATTTATAA
CTGACATACTAAATCAGAAAGTAGTCTATACACAAACACAATTTTCTTCA
TTTTGTAAACTCAAGGATGTAATTTATCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_c01.g1 MSMg01no476_c01.g1 CHROMAT_FILE:
MSMg01no476_c01.g1 PHD_FILE: MSMg01no476_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:08 2005
         (577 letters)



>mm_chr5_57117479_57118455
          Length = 977

 Score = 1033 bits (534), Expect = 0.0
 Identities = 564/574 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcatatctacagaaggaaaatatcttactttaagatgctattcattagaaattgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcatatctacagaaggaaaatatcttactttaagatgctattcattagaaattgtgtt 260

                                                                       
Query: 61  ccaataaagctcaatttatatccagttaattatttttaggcataactagtccatcttctt 120
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 261 ccaataaagctcaatttatatccagttaattatttttaggcatatctagttcatcttctt 320

                                                                       
Query: 121 gggcaacaggaatccacgtagtggcaattctttttgattagtctatgagtagcacctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcaacaggaatccacgtagtggcaattctttttgattagtctatgagtagcacctata 380

                                                                       
Query: 181 ttattgctttctctctttttatactttttcttcaaggaactccatttttatattacaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttattgctttctctctttttatactttttcttcaaggaactccatttttatattacaact 440

                                                                       
Query: 241 acagttgtttaattaagtctgaactggggcataattttgttaaatagcatacttactatt 300
           |||| ||   || ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 acagctggcaaactaagtctgaactggggcataattttgttaaatatcatacttactatt 500

                                                                       
Query: 301 ggtcaaaaaatcacattatgttgatgtgattttcattcatgactaattattacaacatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtcaaaaaatcacattatgttgatgtgattttcattcatgactaattattacaacatag 560

                                                                       
Query: 361 ttataagttgagagaattatgctattaaatgatattggtatttatggtaaaaaattaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttataagttgagagaattatgctattaaatgatattggtatttatggtaaaaaattaaca 620

                                                                       
Query: 421 tacaattttccatttatactacaattcattctttaaaaaagtcctaatgctggataatta 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 tacaattttccatttatactacaattcattttttaaaaaagtcctaatgctggataatta 680

                                                                       
Query: 481 ttttttcattaagtagaagaattaaaatataattctttctatatcacactatctgctact 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 ttttttcattaagtagaagaattaaaatataattctttctatatcatactatctgctact 740

                                             
Query: 541 tcaaagtacaaaattgaagtaaatttataactga 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaaagtacaaaattgaagtaaatttataactga 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)