BAC Information

Click to search

BAC

Clone NameMSMg01-476E19
Chromosome5 (Build37)
Map Location 84,622,591 - 84,622,831
singlet/doubletsinglet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476E19.T7 (MSMg01no476_e19.b1)MSMg01-476E19.TJ (MSMg01no476_e19.g1)
ACCAG557924AG557925
length811784
length of high quality
(start - end)
245 (72 - 316)243 (74 - 316)
definitionCHROMAT_FILE: MSMg01no476_e19.b1 PHD_FILE: MSMg01no476_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:22 2005CHROMAT_FILE: MSMg01no476_e19.g1 PHD_FILE: MSMg01no476_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGATTGCCATGTGGAGAAAATAGATCGGAAAGAAGTGGAGGGCAGTGC
GTTTGAGTAGAAAAAGTGTCTCTCAGAGAAGAAATCAGGCACAGGAGATG
CAGACAGTGGAGGCAGAGGTGGACAGATGATTAACAATGAACAATATCAA
CCAACCAGAACTCCTAGAGCTCCCAGAGACTAAACTATCAACCAAAGAGT
ACACAGCCACATATGTAGCAGAGAACGGCCTAGTCAGCCATTTATGGGAG
GGTAGGCTCCTGTTTTTGTTTAGGCTCTATGCCCCAGTATAGGGGAATGC
CACGGCCAGGAATCACGAGCGAGCGGGCTGGTGAGTAGGGAGAGGGCATA
GGCTTCAGCTTGGTCCTTTGTTTATCTCCACCTTCCCCGTCTCCTTTTCC
TCCCCTCTCCCCCTTCCCTTCTTGCTTTCCCTTTCCTTTCTTTTTTCCCC
TTTTTACCCCCCCTCCCCTTCCCGCTTTCTTTTTTCCTCCTTTCTCTTCT
TTTTTTCTCCTCTTCCTATTCCTCTTTTCTTCTCCTTTTCTCCTTTTTTC
CCCTTCCTCTCCTTTTTCTCTTTTCCCTTTCCTCTCCTTTTTCTTTTCTC
TTTCCCTCCTTTCCTTCCCCTCCCATCTCCTTTCCCTTCCTTACCCCCTC
CCTCTTTCCTTTTTCTTTTTTCCCCTTCCTCCACTTTCCCTTTTTTTTCT
TTTATCCCCTTCCCGCCTCTTTTTTTCCTCTTCCTCCTTCCTTTTCTCAC
CCCTCCTTTCC
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAGTACTGAGTCAGAAGCAAAGTATA
TTGACTCGGTATTTGTGTTTGGGGAACTGATATATATATATATATATATA
TATATATATATATATATCCATATCAACTAAGGTCATCAACATCAGACTCT
GAATTTGTCCGAGGTTTTGAAGTTCACATTGATTTTGAATAATCATATTT
TATTTTATGTTACAATATAAATTTTATATGCCATTAACATGACTTATGTA
TGGAATATCATGAAATATAATCCTGAATATTCTTGCTTAGTGCTTCTCAC
CTTTTTCTCATCTCAGATATACTCAGAATCACATATACCGACTATACAGG
ATTGCATACACGAAACATGACTTTTAGATATTAAAAAGCACTGAAAGATG
CCAGGAGCCAATTTGCATTTGCTGGAAACCACATGCAAGGGCTTTCAGGA
TATAAGCACACATCTGAACTTACATCTTACACCCTGGATACTTGATAACA
TTTCTAGCTTTGACAACCATCTACTTTCTTGGACTGCTACTTATTCCAAA
GATTTTTCTCGCCGTTTCACGACCTCCCTTACTCTCTTCACACCCCCCTT
CTCTTTTCTTTTTCTCCGCTGCCTTCCCACCCACCCTGTACCTCTCCCCC
TTTCCCCCCTCCCCCCCCCTTTTCTTATTTTTTTTTCTCCCCCATCCTTC
CTTCCCCCTCCTTTCTACCCTGTTCCTCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_e19.b1 MSMg01no476_e19.b1 CHROMAT_FILE:
MSMg01no476_e19.b1 PHD_FILE: MSMg01no476_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:22 2005
         (245 letters)



>mm_chr5_84622391_84623035
          Length = 645

 Score =  435 bits (225), Expect = e-126
 Identities = 237/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagatcggaaagaagtggagggcagtgcgtttgagtagaaaaagtgtctctcagagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagatcggaaagaagtggagggcagtgcgtttgagtagaaaaagtgtctctcagagaag 260

                                                                       
Query: 61  aaatcaggcacaggagatgcagacagtggaggcagaggtggacagatgattaacaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatcaggcacaggagatgcagacagtggaggcagaggtggacagatgattaacaatgaa 320

                                                                       
Query: 121 caatatcaaccaaccagaactcctagagctcccagagactaaactatcaaccaaagagta 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 caatatcaaccaacgagaactcctagagctcccagagactaaactatcaaccaaagaata 380

                                                                       
Query: 181 cacagccacatatgtagcagagaacggcctagtcagccatttatgggagggtaggctcct 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 381 cacagccacatatgtagcagagaacggcctagtcggccatttatgggaggggaggctcct 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)