BAC Information

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BAC

Clone NameMSMg01-476K06
Chromosome5 (Build37)
Map Location 143,825,031 - 143,825,272
singlet/doubletsinglet
Overlap gene2810055G22Rik
Upstream geneFoxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, LOC667809
Downstream geneOlfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476K06.T7 (MSMg01no476_k06.b1)MSMg01-476K06.TJ (MSMg01no476_k06.g1)
ACCAG558183AG558184
length760749
length of high quality
(start - end)
242 (79 - 320)414 (77 - 490)
definitionCHROMAT_FILE: MSMg01no476_k06.b1 PHD_FILE: MSMg01no476_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:48 2005CHROMAT_FILE: MSMg01no476_k06.g1 PHD_FILE: MSMg01no476_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAACAGTGATCCGC
GGAATCCTCTCGTTACTGAAACATATCTCTCACCAGCCCCTCAAACTCAC
AGCCACTACTGAAGGACATAAAGCGCTAGACACTGGACCTTAGCATTTTC
TGTATTATATCATTTGTTTTTCTTGGTGCTATGTGAAGTTTTCATTTTAC
AGATAGTGGAAATGTGGTCAGGAGAATATTTAGTGTAGATCACAATTCTA
GGAAGGTGAGGAACTGGAATCTAAGCCCCTCATGGTGAGCTGCCCCCTTT
CTGCAGGTAGCCATGAGTTTATTTTTTTTTTCCATACCCTCCGAAGTACC
CAGTATACACAGCTGAGTCCACAGGACTTCGTCAATGAATACTAACTTAT
GTATCACCAACAGTCTTCATGACTACTCTCAAAACAGATAGTCTTACCAT
GAAAGCCATACCATAAGGATTTGTGCTGTGCCTTGCTGACTGATGAGAAA
GATATGCCTTGCTGACTGACTGCATCACAGTATTCTGCGCACCGCCACCT
GTTAAGTATTAACACTTCAATCATTACCATTGGCTATCTCATGGCTTTAT
TTTATTTTTCTATCTGCGTTACGTCTCTTTCTGTCCTCGTCCCCTTTTTT
CTTTCACCCTCTTTTCCCCCTTTTTTTATTCCCTGTTTTTTTTCTCCCTC
TCCTTTGTTCACCTCTCGAATTTCCCTCCATTGCTCCCTTTTCTCTTTAA
TACTTCTTTG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGATGGATCGTGAGGTAAGACA
TCTGAGAAAAGAACTTGCCACAGATGTAGCATTCATAGGGCTTCTCCCCT
CTGTGAATTCTCCGGTGTCTACAGAGGGCTGAATTCTGGTAGAAGGTCTT
TCCGCACTCGCTACACTCATAGGGCTTCACTCCTGAGTGAGTTCTGTGAT
GCACGGTGAGGTAGGACAGCTGCGAGAATAATTTCCCACACTCGTTACAC
TCGTAAGGCTTCTCCCCCGTGTGTTTTCTCTGATGTCTCATAAGGGCTGA
GTTCAGGTAGAAGGACTTCCCGCACTCCGCACACTCGTAGGGCTTCTCCC
CCGAGTGGGTTCTGTAATGCACGGTGAGGTACGACAGCCTGGAGAAGAAC
TTGCCACACTCGTTGCATTCGTACGGCTTCTCGCCCGTGTGCGTCCTCAT
GTGGGTTGTGAGCGTGTACTTGCGGCAGAAGCACTTGCCATATTCGCTGT
TTTTGTACAGTTTGACGTTTGTGCGGATTTTCTGGTGGCCATTGTGTGTT
GACTTCTGACTGAATGTCTTGCCTTTTTCGCGGCCCCCCTTAGGTTTCTC
CTTTTACCGCTTCTTCCGGTGCCGAGCGTCGTGTGCTTCTTTGTCTTTTC
CCACTCCCCGTTTCTTTTCTTCTTTGCCCCGCTTTTTCCCCTCACACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_k06.b1 MSMg01no476_k06.b1 CHROMAT_FILE:
MSMg01no476_k06.b1 PHD_FILE: MSMg01no476_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:48 2005
         (242 letters)



>mm_chr5_143824831_143825472
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaccagcccctcaaactcacagccactactgaaggacataaagcgctagacactggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcaccagcccctcaaactcacagccactactgaaggacataaagcgctagacactggac 260

                                                                       
Query: 61  cttagcattttctgtattatatcatttgtttttcttggtgctatgtgaagttttcatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttagcattttctgtattatatcatttgtttttcttggtgctatgtgaagttttcatttt 320

                                                                       
Query: 121 acagatagtggaaatgtggtcaggagaatatttagtgtagatcacaattctaggaaggtg 180
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 321 acagatagtggaaatgtggtcaggggaatatttagtgtagatcacaattctaggaagggg 380

                                                                       
Query: 181 aggaactggaatctaagcccctcatggtgagctgccccctttctgcaggtagccatgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaactggaatctaagcccctcatggtgagctgccccctttctgcaggtagccatgagt 440

             
Query: 241 tt 242
           ||
Sbjct: 441 tt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)