Query= MSMg01no476_p23.b1 MSMg01no476_p23.b1 CHROMAT_FILE:
MSMg01no476_p23.b1 PHD_FILE: MSMg01no476_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:18 2005
(249 letters)
>mm_chr5_97398246_97398894
Length = 649
Score = 412 bits (213), Expect = e-119
Identities = 247/273 (90%), Gaps = 24/273 (8%)
Strand = Plus / Plus
Query: 1 tagcttggcccacgcagcaagtaagtcagtgggagaatgcttgccttgtgtgcacagagc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagcttggccaacgcagcaagtaagtcagtgggagaatgcttgccttgtgtgcacagagc 260
Query: 61 cctaacttactatatccagcattttaagaaaaattaaaaataaataagcaaataaagttg 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 cctaacttactatatccagcattttaagaaaaattaaaaagaaataagcaaataaagttg 320
Query: 121 ggtacacacacacac--acacacacacacacac----------------------tacaa 156
||||||||||||||| |||||||||||||||| |||||
Sbjct: 321 ggtacacacacacacgtacacacacacacacacacacacacacacacatacacactacaa 380
Query: 157 gtgtattgtggagcacttctgcatttgaacctgaatttgatacctagtcccacaaacaca 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtattgtggagcacttctgcatttgaacctgaatttgatacctagtcccacaaacaca 440
Query: 217 catgcatgtgtgtgtttatgcacatatacatgt 249
|||||||||||||||||||||||||||||||||
Sbjct: 441 catgcatgtgtgtgtttatgcacatatacatgt 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no476_p23.g1 MSMg01no476_p23.g1 CHROMAT_FILE:
MSMg01no476_p23.g1 PHD_FILE: MSMg01no476_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:18 2005
(485 letters)
>mm_chr5_97554791_97555673
Length = 883
Score = 783 bits (405), Expect = 0.0
Identities = 465/491 (94%), Gaps = 14/491 (2%)
Strand = Plus / Minus
Query: 1 cctgaggaaaacggaaccgaaatttagactttacaaaaaataaatcgtgggtttttatct 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 683 cctgaggaaaatggaaccgaaatttagactttacaaaaaataaatcgtgggtttctatct 624
Query: 61 tttcattaaatataattttctaatggtacgcctagtttacatttaggatgtttaactcaa 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttcattaaatatagttttctaatggtacgcctagtttacatttaggatgtttaactcaa 564
Query: 121 atattgataataaactgagtccctttcagaagcttttgccaaccttaaaacctttcattt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 atattgataataaactgagtccctttcaaaagcttttgccaaccttaaaacctttcattt 504
Query: 181 ctttccctatctcaacaca-tccttatgcagcagggaagtggggcggggtggtccaaggg 239
||||||||| ||| || | | ||||||||||||||||||||||| ||||||||||||||
Sbjct: 503 ctttcccta--tcagcatagt-cttatgcagcagggaagtggggcagggtggtccaaggg 447
Query: 240 taacggttctttttt-----agaagagtgccatctgcaggaaaacagtgtaactacagat 294
||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taacggttc-----tgcgggagaagagtgccatctgcaggaaaacagtgtaactacagat 392
Query: 295 aaaatgcacaggtgacccctagaactctggaagtgcctgtcccacaataaaatcccaaca 354
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 391 aaaatgcacaggtgacccctagaactctggaagtgcctctcccacaataaaatcccaacg 332
Query: 355 gtagtgtggtccttcatattgcatttcctggcattgaaagccaaaataacatgacttgaa 414
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 331 gtagtgtggtccttcatattgcatttcctagcattgaaagccaaaataacatgacttgaa 272
Query: 415 aagagatgttattcagaacactgctctggttttattaggaacccttgaagacaaaaagga 474
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 271 aagagatgttattcagaacactgctctggttttattaggaacccttgaagacataaagga 212
Query: 475 aactgtccttt 485
| |||||||||
Sbjct: 211 atctgtccttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 883
Length adjustment: 10
Effective length of query: 475
Effective length of database: 873
Effective search space: 414675
Effective search space used: 414675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
