Query= MSMg01no477_d07.b1 MSMg01no477_d07.b1 CHROMAT_FILE:
MSMg01no477_d07.b1 PHD_FILE: MSMg01no477_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:35 2005
(661 letters)
>mm_chr5_45963910_45964970
Length = 1061
Score = 1013 bits (524), Expect = 0.0
Identities = 530/532 (99%)
Strand = Plus / Minus
Query: 16 taaatctttaaaactcattgcttgggaatggaggttgtgacctctgggagtttctggcta 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 taaatctttaaaactcattgcttgggaatggaggttgtgacctctgggagtttctggcta 473
Query: 76 aatgggatccggaggttcaccacctccctgtgtcctctgcacaaagtaaagggcatgcaa 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aatgggatccggaggttcaccacctccctgtgtcctctgcacaaagtaaagggcatgcaa 413
Query: 136 acaggcaggaaggctgtctgcggggaggggagatggcgcataaatttagctgcaaggaac 195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ccaggcaggaaggctgtctgcggggaggggagatggcgcataaatttagctgcaaggaac 353
Query: 196 agagagtctgatttatggggtcttagacaaagaggcctttaggatcttgcataaaggcag 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agagagtctgatttatggggtcttagacaaagaggcctttaggatcttgcataaaggcag 293
Query: 256 gaagcaggaggccactgctgactctggagctaagtgactgccaggttggtgactcttcct 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gaagcaggaggccactgctgactctggagctaagtgactgccaggttggtgactcttcct 233
Query: 316 gtccttttactctaagatgcatcgtcacctttgtgggtccgaggcacccttgccttccca 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gtccttttactctaagatgcatcgtcacctttgtgggtccgaggcacccttgccttccca 173
Query: 376 ggccccttctcttataacaagtatattcaaattgtatgactgcattgatagatcaatgta 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ggccccttctcttataacaagtatattcaaattgtatgactgcattgatagatcaatgta 113
Query: 436 acccaagctaaagatttttcttttgatttttaaatgaacttaaagcacaggttcttaatg 495
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 112 acccaagctaaagatttttcttttgatttttaaatgaacttaaatcacaggttcttaatg 53
Query: 496 gtactaatggaaggggctaacgacaagattgaagagacctggttagaccaac 547
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 gtactaatggaaggggctaacgacaagattgaagagacctggttagaccaac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_d07.g1 MSMg01no477_d07.g1 CHROMAT_FILE:
MSMg01no477_d07.g1 PHD_FILE: MSMg01no477_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:35 2005
(565 letters)
>mm_chr5_45756212_45757174
Length = 963
Score = 1015 bits (525), Expect = 0.0
Identities = 551/565 (97%), Gaps = 10/565 (1%)
Strand = Plus / Plus
Query: 1 aactctctccacccatttttgtatatgcctggccatacctgtctttgatcctttggagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactctctccacccatttttgtatatgcctggccatacctgtctttgatcctttggagtt 260
Query: 61 ggccagtaaacaaatggccttcatgtccaaaaaaaaaaaaaaaaaaagtaacaaaataac 120
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ggccagtaaataaatggccttcatgtccaaaaaaaaaaaaaaaaa--gtaacaaaataac 318
Query: 121 cgaggaaatccacttaaaaggaatagaggtttattttggattttctgaggtttcaatcta 180
|||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 319 cgaggaaatcgacttaa--------gaggtttattttggattttctgaggtttcaatcta 370
Query: 181 ttatccattctctttgattcttgtggtcaatggggtcaagtgcatggtggaacaacgaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttatccattctctttgattcttgtggtcaatggggtcaagtgcatggtggaacaacgaac 430
Query: 241 aaagcaactcaccttatgatgaccagggattgttaaaatgagagaaggaaagaaagtccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaagcaactcaccttatgatgaccagggattgttaaaatgagagaaggaaagaaagtccc 490
Query: 301 aatatctccttaaagggcacacatttaataagaagaaattattctttccatcagacccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aatatctccttaaagggcacacatttaataagaagaaattattctttccatcagacccca 550
Query: 361 cttcctaaaggttggttctgccatctcccgatagctccacaggctgtagacagagacttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cttcctaaaggttggttctgccatctcccgatagctccacaggctgtagacagagacttc 610
Query: 421 aactcatggcctttgaagccacttccaattcaaactgtatgtatcaaatggctaacagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aactcatggcctttgaagccacttccaattcaaactgtatgtatcaaatggctaacagct 670
Query: 481 ttgaactcaaggggacagaaacaatctccagcacccaaaagagcaaacaaagaatggagc 540
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 671 ttgaactcaaggggacaaaaacaatctccaggacccaaaagagcaaacaaagaatggagc 730
Query: 541 ttctccaaggccttgttgtcctcca 565
|||||||||||||||||||||||||
Sbjct: 731 ttctccaaggccttgttgtcctcca 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 963
Length adjustment: 10
Effective length of query: 555
Effective length of database: 953
Effective search space: 528915
Effective search space used: 528915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
