Query= MSMg01no477_p13.b1 MSMg01no477_p13.b1 CHROMAT_FILE:
MSMg01no477_p13.b1 PHD_FILE: MSMg01no477_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:34 2005
(654 letters)
>mm_chr5_20412825_20413878
Length = 1054
Score = 1197 bits (619), Expect = 0.0
Identities = 645/655 (98%), Gaps = 5/655 (0%)
Strand = Plus / Minus
Query: 1 ttcactctgtattcccagctggtctccaaatcacagaaccctgcctgcccctgcctctct 60
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 955 ttcactctgtagaccaagctggtctccaaatcacagaactctgcctgcccctgcctctct 896
Query: 61 cctgagtgctgagattaaaggtctgcaccatcatgccgctcaacataattagaaaaaagt 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 895 cctgagtgctgagattaaaggtctgcaccatcat---gctcaacataattagaaaaaagt 839
Query: 121 ttatttaaatcaggggaaaggaaggaaacagtgatcttgtgttacgtatatacgtaactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ttatttaaatcaggggaaaggaaggaaacagtgatcttgtgttacgtatatacgtaactt 779
Query: 181 ctcactcttaactgtaatggccaagttaaatgttacaccagcaaatgcccttgcctgtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ctcactcttaactgtaatggccaagttaaatgttacaccagcaaatgcccttgcctgtta 719
Query: 241 ctgccctgtgtgtcttgtagaccaagaagtgtaggaaggatgcctgttaaacactttgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ctgccctgtgtgtcttgtagaccaagaagtgtaggaaggatgcctgttaaacactttgag 659
Query: 301 cacaaagggggtggggggtggctgacactgtgggaaactggccgaggtagggacttgtac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cacaaagggggtggggggtggctgacactgtgggaaactggccgaggtagggacttgtac 599
Query: 361 agttgtataaaacatcgagttcacgccccatcatagtctataaaagttctaatcaaggcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agttgtataaaacatcgagttcacgccccatcatagtctataaaagttctaatcaaggcc 539
Query: 421 catttgatatttctttaaaaatgtattcattattgttagtctatgtggggtagggcacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 catttgatatttctttaaaaatgtattcattattgttagtctatgtggggtagggcacat 479
Query: 481 atgtgcatgtggcagtcagcagacaacttggtggaatcccttttttctttccttcctttt 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 478 atgtgcatgtggcagtcagcagacaacttggtggaatcccttttttctttcctttctttt 419
Query: 541 ttctatggagtctcatctctccttctttatttgcatgagttgtgggcacagatctctagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttctatggagtctcatctctccttctttatttgcatgagttgtgggcacagatctctagt 359
Query: 601 tttgtgtng-ccagctcttacctgctgtgctgctgcactcttactatgggttacc 654
||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tttgtgt-gcccagctcttacctgctgtgctgctgcactcttactatgggttacc 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_p13.g1 MSMg01no477_p13.g1 CHROMAT_FILE:
MSMg01no477_p13.g1 PHD_FILE: MSMg01no477_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:34 2005
(668 letters)
>mm_chr5_20208898_20209962
Length = 1065
Score = 1245 bits (644), Expect = 0.0
Identities = 661/668 (98%), Gaps = 3/668 (0%)
Strand = Plus / Plus
Query: 1 attggtgtgatgccttttttactgccatttctgtggtcaagtcacatttctgtacatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggtgtgatgccttttttactgccatttctgtggtcaagtcacatttctgtacatttt 260
Query: 61 cagtagtagggaaaaaaggttttaaaaattgtatcctagggagcagtttgccgtaagccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 cagtagtagggaaaaaaggttttaaaaattgtatcctagggagcagtttgccgtaagtc- 319
Query: 121 taagaattttgcaggttagctcgtagatcctaattggttgcctctaaaataatgagtttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 --agaattttgcaggttagctcgtagatcctaattggttgcctctaaaataatgagtttg 377
Query: 181 ataatcaaaagaccataatctgtttaatcgagattgacaacgctgcagttccttcctgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ataatcaaaagaccataatctgtttaatcgagattgacaacgctgcagttccttcctgaa 437
Query: 241 aaggttttttgtcatcccaggcactcagagatacgtagctgctctgttagcaatcttcta 300
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaggcttcctgtcatcccaggcactcagagatacgtagctgctctgttagcaatcttcta 497
Query: 301 ttttacctatttgattgtcttattttaaagctcttcatttgcactttgacaaagtatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttttacctatttgattgtcttattttaaagctcttcatttgcactttgacaaagtatttg 557
Query: 361 tcctatatttctcaaattagaatctctaatattgaaagcattatgataactaatttattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcctatatttctcaaattagaatctctaatattgaaagcattatgataactaatttattt 617
Query: 421 tcattaaagaacataagtcctttggcattcctttctgctttccttatttgatctcctttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcattaaagaacataagtcctttggcattcctttctgctttccttatttgatctcctttt 677
Query: 481 tgtttccacctgtagcttttcgcctccaatttgctaatgctttttgttacactaacaatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgtttccacctgtagcttttcgcctccaatttgctaatgctttttgttacactaacaatc 737
Query: 541 tatagatgcacctttatgtccccgggttaccatcgcaggtcagcgattgtccctgcagta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tatagatgcacctttatgtccccgggttaccatcgcaggtcagcgattgtccctgcagta 797
Query: 601 aaaactgtcaaacgttaacattagtcagctatccattggtatttattgtagctgcacata 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aaaactgtcaaacgttaacattagtcagctatccattggtatttattgtagctgcacata 857
Query: 661 tttaaaga 668
||||||||
Sbjct: 858 tttaaaga 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1065
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1055
Effective search space: 694190
Effective search space used: 694190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
