Query= MSMg01no477_p14.b1 MSMg01no477_p14.b1 CHROMAT_FILE:
MSMg01no477_p14.b1 PHD_FILE: MSMg01no477_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:34 2005
(685 letters)
>mm_chr5_81007227_81008312
Length = 1086
Score = 1232 bits (637), Expect = 0.0
Identities = 666/677 (98%), Gaps = 5/677 (0%)
Strand = Plus / Minus
Query: 12 agccaattaaactcatgatatattcattaatgtgcttatgtagatagggctaacagatat 71
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1086 agccaattaaaatcatgatatattcattaatgtgcttatgtagatggggctaacagatat 1027
Query: 72 aattcattgggacatagagaaataagttagacaacagtgagaatttcttaatagttaaga 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 aattcattgggacatagagaaataagttagacaacagtgagaatttcttaatagttaaga 967
Query: 132 aacattatattcgaggccagcctggtctacagagtgagttccaggacagccagagctaca 191
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 aacattattttcgaggccagcctggtctacagagtgagttccaggacagccagagctaca 907
Query: 192 cagaaaaaccctgtctcgaacattatagattgtgttagagagagactgaaggaaggaaaa 251
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 cagagaaaccctgtctcgaacattatagattgtgttagagagagactgaaggaaggaaaa 847
Query: 252 caaatagaagttactctgggcatgaactctttcctgaataatttggaagttaccctggaa 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 caaatagaagttactctgggcatgaactctttcctgaataatttggaagttaccctggaa 787
Query: 312 tattctgtagttgtataaacacacttattgaatgttttgcaattacatgt-ttttttttt 370
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 786 tattctgtagttgtataaacacacttattgaatgttttgcaattacatggcttttttttt 727
Query: 371 ccttttcactgtttgcttgggtaggtgacctttggctcagcaactgtgtatgtacacaat 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccttttcactgtttgcttgggtaggtgacctttggctcagcaactgtgtatgtacacaat 667
Query: 431 ttaattgaagctttttgagagttccaaggaaatgaaattt--cccctcagatgctgtcct 488
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 666 ttaattgaagctttttgagagttccaaggaaatgaaatttttcccc--agatgctgtcct 609
Query: 489 tcagagaaacctacccaggaggcatggagtttctggggttaaatagctgcctacatagca 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tcagagaaacctacccaggaggcatggagtttctggggttaaatagctgcctacatagca 549
Query: 549 ttaagactgtatcatttattttattccattttctactcggtatatccaaatagtaaattt 608
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 548 ttaagactgtatcatttattttattccattttccactcggtatatccaaatagtaaattt 489
Query: 609 tgtttttgttgttaaatatttactgtgattgaacaagaaacctttactagatgaggaatc 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgtttttgttgttaaatatttactgtgattgaacaagaaacctttactagatgaggaatc 429
Query: 669 ggctggacaacctgtac 685
|||||||||||||||||
Sbjct: 428 ggctggacaacctgtac 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space: 726300
Effective search space used: 726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_p14.g1 MSMg01no477_p14.g1 CHROMAT_FILE:
MSMg01no477_p14.g1 PHD_FILE: MSMg01no477_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:34 2005
(687 letters)
>mm_chr5_80848274_80849364
Length = 1091
Score = 1286 bits (665), Expect = 0.0
Identities = 683/691 (98%), Gaps = 4/691 (0%)
Strand = Plus / Plus
Query: 1 cagtcagcccaataagaaattactttacatttatttcagacatgtcagccgtattgaaag 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 cagtcagcccaataagaaattactttacatttatttcagacatgtcagtcgtattgaaag 260
Query: 61 tactagtaagtaagtctgttatttcaagactgaactttcattccctattttacctgtttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactagtaagtaagtctgttatttcaagactgaactttcattccctattttacctgtttg 320
Query: 121 catcgtatgtgcaggataaggacccaccagaatgtttggtcagtaacagcacagcgtaag 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcctatgtgcaggataaggacccaccagaatgtttggtcagtaacagcacagcgtaag 380
Query: 181 tgaagctggatcttgtagccagcaaagttgaggtggtagcatgtctgtagctaatgtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagctggatcttgtagccagcaaagttgaggtggtagcatgtctgtagctaatgtctg 440
Query: 241 gaattttttcttgtttccaactcagtctatttctagttgggcacttacaagtcagtccat 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattttgtcttgtttccaactcagtctatttctagttgggcacttacaagtcagtccat 500
Query: 301 gtctattcactttaaaatataatcatatattttataattaaatgacctatctgaactaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctattcactttaaaatataatcatatattttataattaaatgacctatctgaactaac 560
Query: 361 ataaaatagttaacagtgctcatatatgttgtaaaaatgaaaatctttacaaaaatgcat 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atataatagttaacagtgctcatatatgttgtaaaaatgaaaatctttacaaaaatgcat 620
Query: 421 gtttaactcaaatctgacttttttgttaagtggacatgcttaagataatcttttggtttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttaactcaaatctgacttttttgttaagtggacatgcttaagataatcttttggtttc 680
Query: 481 catggaatgctaaaatagctgcatagtattagtcattatctaaactaaaaaaaaa----t 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 catggaatgctaaaatagctgcatagtattagtcattatctaaactaaaaaaaaaaaaat 740
Query: 537 gaagtattatataattattttcatatggtcttttttgtctcatttgatataggcaaaact 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaagtattatataattattttcatatggtcttttttgtctcatttgatataggcaaaact 800
Query: 597 cagttttcagaattacatatctaaataagttaaattgaaagttttatattgttatcttca 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagttttcagaattacatatctaaataagttaaattgaaagttttatattgttatcttca 860
Query: 657 tttgaacaaaagagtttgtaaatacaaattg 687
|||||||||||||||||||||||||||||||
Sbjct: 861 tttgaacaaaagagtttgtaaatacaaattg 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1091
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1081
Effective search space: 731837
Effective search space used: 731837
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
