NAATCTATATTTGCGGCGCTAAACGACTCCTTTTTCAACAGGACCGCGGA
ATCATTCCTTTCTTGAAGCATCCTCTAACCTGAGAGTGTACACATCTGTC
ACTCACTGTGACATGAAACTGGGCTATTCCCAAGAGATAGAAAACCATTA
CATAGAAGGACTTGGTAAGCAATTTTATGAAGACATGATTGATATAATTC
AGGCAACAGTACAGCAGAACTTTGACACAGAGACTGATACGCTGTACGAT
GAAATCCTGCAGCACTCCTCACTGTGTAAAACATATGCCTCCTTCTATGA
ATACAAATGTGAATCTTTTTTCATCTTGCATAAATACGTCCTTCCAAGCA
AAACCGGGCATATCAACCCTCTCGTTGTGTATGGGGGACCATGCACTGGG
AAGACTCTACCGCTAGCTGAAGTAGCAAAAAAGGTAAAAATAAATAAATA
AAAATAAAAAATAAATCTACACTTTCCCTTCTGTTTGTAGAAATATTTTC
CCCCTTTGGGGAAAATAATAACTTGATCAAATTCAATTTTCTGCGCTTGC
TATCTGAATTGTAACTAGACTTTCTGGGATGGCTACTTCTGTGTTTCATT
TCTGCTGGTGTAACAGATGTGCTGTGAGAACAGGATGCATGGGACAGGAC
TATAAAACCACTTTCTATAGTGACTCCCTACCCCCTCCCACCCACCTCAT
TAGGATGAAAGGAAACCCCATTCTTGAAAACCCTTATCATCCC

TTCAATGATATGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTACCAGCAGCAATCTCCTATACTAGGGCATATGATCTTT
GCAATACCAAGGGTCTCCTCCCATTGATGGCCAACTAGGCCATCCTCTGC
TACATATGCAACTAGAGACACAGTTCTCGGGGGGGGGGGGGGGGGCCTCG
CCTCCCTCGTTACATCTTTCTTCCTCTCTTCTCCCCTCCTTCCTTTCTTT
TTCCTTCCCTTCCTACTTCTCTTCGTCCTTCTTCCTTCCCCTCTCCTCCT
GCCCCCCCCCTTTTTATCTTTTCCAACCACACCCCACAGCCCCCCCGACA
CCGACCCTTTTTTTACCCCCTCCCCCTCCTCCGCTTTTTTTTTCCCCCTT
TTCCGCTATTGTCCTCCTACCCCCCTCTTTTACCCCTTTTACTTTTTCCC
ACCCCTCTATTCCCCCTCTATTGTCCTTGTCCTCCCTTCCCTCCCTTCTT
CCTCTTCCCTCTCTTATCTTCTTTTTCGTCCGATTCACCTCGCCGCTTTC
GCTTCCGTTCCCTCTTCTCCCCTTTTCCCCCGCCCCTTCCCACTCTTCTT
ATTTTTCCCATTCCCTCTCCTCTTCTTCCGCTTCCTTTCCCTTCCCTCCA
TCGCTCGTGGTCCCCCATCCTTTTTTTCTTATTTCCGCCTTTATGTCCGT
ATATCACCCCAATCCCCCTTTTCCTTTCCACTATACGCGCCGCATTGTCC
CTTCTTTCGCCCTTTTTCACCGTCGGTTGTTTGCTATTATCGCCGTTGTT
CCCCGCTCTCTTTCGCTTGTCCCCCCTCCCTGTTTCC

Query= MSMg01no479_l08.b1 MSMg01no479_l08.b1 CHROMAT_FILE:
MSMg01no479_l08.b1 PHD_FILE: MSMg01no479_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:48 2005
         (574 letters)



>mm_chr5_64191301_64192274
          Length = 974

 Score = 1025 bits (530), Expect = 0.0
 Identities = 563/574 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctctaacctgagagtgtacacatctgtcactcactgtgacatgaaactgggctattcc 60
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctctaatttgagagtgtacacatctgtcactcactgtgacatgaaactgggctattcc 260

                                                                       
Query: 61  caagagatagaaaaccattacatagaaggacttggtaagcaattttatgaagacatgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagagatagaaaaccattacatagaaggacttggtaagcaattttatgaagacatgatt 320

                                                                       
Query: 121 gatataattcaggcaacagtacagcagaactttgacacagagactgatacgctgtacgat 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gatataattcaggcaacagtacagcagaactttgacacggagactgatacgctgtacgat 380

                                                                       
Query: 181 gaaatcctgcagcactcctcactgtgtaaaacatatgcctccttctatgaatacaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatcctgcagcactcctcactgtgtaaaacatatgcctccttctatgaatacaaatgt 440

                                                                       
Query: 241 gaatcttttttcatcttgcataaatacgtccttccaagcaaaaccgggcatatcaaccct 300
           |||||  |   |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gaatcactaaacatcttgcataaatacatccttccaagcaaaaccgggcatatcaaccct 500

                                                                       
Query: 301 ctcgttgtgtatgggggaccatgcactgggaagactctaccgctagctgaagtagcaaaa 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 ctcgttgtgtatgggggaccatgcactgggaagactctactgctagctgaagtagcaaaa 560

                                                                       
Query: 361 aaggtaaaaataaataaataaaaataaaaaataaatctacactttcccttctgtttgtag 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggtaaaaataaataaataaaaattaaaaataaatctacactttcccttctgtttgtag 620

                                                                       
Query: 421 aaatattttccccctttggggaaaataataacttgatcaaattcaattttctgcgcttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatattttccccctttggggaaaataataacttgatcaaattcaattttctgcgcttgc 680

                                                                       
Query: 481 tatctgaattgtaactagactttctgggatggctacttctgtgtttcatttctgctggtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatctgaattgtaactagactttctgggatggctacttctgtgtttcatttctgctggtg 740

                                             
Query: 541 taacagatgtgctgtgagaacaggatgcatggga 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 741 taacagatgtgctgtgagaacaggatgcatggga 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)