BAC Information

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BAC

Clone NameMSMg01-479N17
Chromosome5 (Build37)
Map Location 124,656,047 - 124,656,711
singlet/doubletsinglet
Overlap genePitpnm2
Upstream genePsmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4
Downstream geneMphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479N17.T7 (MSMg01no479_n17.b1)MSMg01-479N17.TJ (MSMg01no479_n17.g1)
ACCAG560636AG560637
length777769
length of high quality
(start - end)		660 (45 - 704)657 (73 - 729)
definitionCHROMAT_FILE: MSMg01no479_n17.b1 PHD_FILE: MSMg01no479_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:59 2005CHROMAT_FILE: MSMg01no479_n17.g1 PHD_FILE: MSMg01no479_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGTTTTACGTGTGCAGTTAGGTGGCTGAAATCTGTTCACATTGT
TTGGCTCTCCAGCTCCAGAATCGCTTTTGACTTGCAAAGCAAACTCTGGG
TAGCAGTGCCTGATGCCAGACCTGGCATTCTGAGTTTGATCTCTGGAAAC
TACATGGTAGAAGGAAAGAAGAAGAGACTCCTGCCAGTTGTCTGCACACA
CACAGAGACACACACAGAGACACACACACACACACCAGCATGTATTTACC
CCATTCCCCATTGAATAAATTTTTAAATGAAAAAAAAGGGGGAACCCCCC
TGAAATTCTGTCCTGGAGATATAGCTCATTTGGTACAGTGCTTGCCTAGC
ATGTGTGAGGTACTAAGTTCAGTACCCAGCAGCCTCCCAACCCGACCCAG
TGCAAATATATAAATGTTGGAAAAAGAAAAGTGAAAAACAGAGGCTGGCA
AGATGGCTCAGCAGGTAAGAGAGCTGACTGAGTTCAAATCCCAGCAACCA
CATGGTGGCTCACAACCACCCATAATGAGATCTGACGCCTTCTTCTGGTG
CGTCTGAAGTCAGCTACAGTGACTTATGTATAATAATAAATAAATCTTTG
GGCCAGAGCAAGCAGGGACTGAGCGAGTGGAGTTGACCAGAGACAGCGGG
GGCCGACCGGAGCGAGCAGAGATCCTAAAAATTCAATTCCCCAGAACTAC
ATAAAGGCTCACAACCATCTGTACAGC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGCCTGTGGGAGCTCAGCCCAAACTGG
GATCACCTGGAGTGCTGGCCTGGGCACTGGTGCTGGCAGTGGGGACTTGG
GAATGGGGGCAAATAAAATTGCTCCACAAAGAGGTCTGGGCAGGGCTAAA
ACAGAAAAAAAAAAGACACCAAACGAGGTCCACGATAGCCTCCAGCAGGA
GCACTGCCCAAGGCTGGACAATCCTCTTCCCAACTGTTGCACCAGAGGAG
TGAAAGCTGCAGGAACAGGAACAGGGGCCACCATTCTTAGCATAATCTAC
TCCCCATATCATGTGGCTGTCCCTAGGACCCACTTATTAGGTCACTCGCC
ATTTTCTTTCTACTGTGGTCACTCAGAGCTGAAGAAAACGTCAGTAGTTT
ACCTGCTATTACAGCTCCCAACATACAGCTCACTTTCCCTTCCCTTCCCT
AAGCAGAACCTCCTTCCACCCCTCCTTCGCCCTAGAGGAACAAGTGTGCT
CAGGCGGGGAGTTGGGAGGGACTGGGTCTCTTTGAGAGAACACACGCAAA
CACACTGGACCGGCAGCAGTGGTGGCATGGCTGGGGAGGTGTTCCAGCAG
ACTTATTTATAGCCGAGCCCCCATCCACATGCTCCCCCAATGCTGCCTGC
CTGCCTGCTTGCCACTGGGGCTTTTCAATCTGTGTCTATATTTATCACTT
GAAGCCGTTGGGATAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_n17.g1 MSMg01no479_n17.g1 CHROMAT_FILE:
MSMg01no479_n17.g1 PHD_FILE: MSMg01no479_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:00 2005
         (657 letters)



>mm_chr5_124655855_124656911
          Length = 1057

 Score = 1197 bits (619), Expect = 0.0
 Identities = 650/665 (97%), Gaps = 8/665 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcctgtgggagctcagcccaaactgggatcacctggagtgctggcctgggcactggtg 60
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 193 ctgcctgtgggagctcagcccaaactgggatcacctggtgtgctggcctgggcaatggtg 252

                                                                       
Query: 61  ctggcagtggggacttgggaatgggggcaaataaaattgctccacaaagaggtctgggca 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 253 ctggcagtggggacttgggaatgggggcaaataaaattgttccacaaagaggtctgggca 312

                                                                       
Query: 121 gggctaaaacag--------aaaaaaaaaagacaccaaacgaggtccacgatagcctcca 172
           ||||||||||||        ||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggctaaaacagaaaaaaaaaaaaaaaaaagacaccaaacgaggtccacgatagcctcca 372

                                                                       
Query: 173 gcaggagcactgcccaaggctggacaatcctcttcccaactgttgcaccagaggagtgaa 232
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 373 gcaggagcactgcccaaggctggacaatcctcttcccagctgttgcaccagaggagtgaa 432

                                                                       
Query: 233 agctgcaggaacaggaacaggggccaccattcttagcataatctactccccatatcatgt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agctgcaggaacaggaacaggggccaccattcttagcataatctactccccatatcatgt 492

                                                                       
Query: 293 ggctgtccctaggacccacttattaggtcactcgccattttctttctactgtggtcactc 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggctgtccctaggacccacttattaggtcactcgccattttctttctactgtggtcactc 552

                                                                       
Query: 353 agagctgaagaaaacgtcagtagtttacctgctattacagctcccaacatacagctcact 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agagctgaagaaaacgtcagtagtttacctgctattacagctcccaacatacagctcact 612

                                                                       
Query: 413 ttcccttcccttccctaagcagaacctccttccacccctccttcgccctagaggaacaag 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttcccttcccttccctaagcagaacctccttccacccctccttcgccctagaggaacaag 672

                                                                       
Query: 473 tgtgctcaggcggggagttgggagggactgggtctctttgagagaacacacgcaaacaca 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 673 tgtgctcaggcggggagttgggagggactgggtctctttgagagaacacactcaaacaca 732

                                                                       
Query: 533 ctggaccggcagcagtggtggcatggctggggaggtgttccagcagacttatttatagcc 592
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ctggcccggcagcagcggtggcatggctggggaggtgttccagcagacttatttatagcc 792

                                                                       
Query: 593 gagcccccatccacatgctcccccaatgctgcctgcctgcctgcttgccactggggcttt 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gagcccccatccacatgctcccccaatgctgcctgcctgcctgcttgccactggggcttt 852

                
Query: 653 tcaat 657
           |||||
Sbjct: 853 tcaat 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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