Query= MSMg01no480_l07.b1 MSMg01no480_l07.b1 CHROMAT_FILE:
MSMg01no480_l07.b1 PHD_FILE: MSMg01no480_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:06 2005
(329 letters)
>mm_chr5_17897192_17897922
Length = 731
Score = 621 bits (321), Expect = 0.0
Identities = 328/331 (99%), Gaps = 2/331 (0%)
Strand = Plus / Minus
Query: 1 taacaatattttctgcccccacaatgagtgtagaagacagttctccctacagtgacaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 taacaatattttctgcccccacaatgagtgtagaagacagttctccctacagtgacaact 472
Query: 61 gacaataaaattttgctttatatatttagctaattagaagtatagaagatatccatttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gacaataaaattttgctttatatatttagctaattagaagtatagaagatatccatttct 412
Query: 121 tatatataattttaggacctcggcagtttgttgc--ttttttttacattattttttcttt 178
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 411 tatatataattttaggacctcggcagtttgttgcttttttttttacattattttttcttt 352
Query: 179 atccttaagtatttgtctcatctgcccacaatttacttaaatatttttgttttaagattg 238
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atgcttaagtatttgtctcatctgcccacaatttacttaaatatttttgttttaagattg 292
Query: 239 gtgagagataaaacaaggggatgtagaaaacaagactagccagagagttgtaagttctgg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gtgagagataaaacaaggggatgtagaaaacaagactagccagagagttgtaagttctgg 232
Query: 299 aagggacctgtccatttcatcaatagccatg 329
|||||||||||||||||||||||||||||||
Sbjct: 231 aagggacctgtccatttcatcaatagccatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 731
Length adjustment: 9
Effective length of query: 320
Effective length of database: 722
Effective search space: 231040
Effective search space used: 231040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_l07.g1 MSMg01no480_l07.g1 CHROMAT_FILE:
MSMg01no480_l07.g1 PHD_FILE: MSMg01no480_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:06 2005
(561 letters)
>mm_chr5_17863775_17864735
Length = 961
Score = 1000 bits (517), Expect = 0.0
Identities = 550/563 (97%), Gaps = 6/563 (1%)
Strand = Plus / Plus
Query: 1 cttcactgtttctttgtttgcttgtttataactttagaatccttctcatgcactggtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcactgtttctttgtttgcttgtttataactttagaatccttctcatgcactggtttg 260
Query: 61 gaggaataagaactgtataatttcttctgaaaatcgggactctggtatatctctcattaa 120
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 261 gaggaataagaactgtataatttcttctgaaaatcaggactctggtacatctctcattaa 320
Query: 121 ctccccacagatggtaagagagatcaacttcagctgcatgttacacactcaactatattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccccacagatggtaagagagatcaacttcagctgcatgttacacactcaactatattt 380
Query: 181 aattattaatctaaaacagtggttctccgcagaggttacatttctgcctccagggggcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattattaatctaaaacagtggttctccgcagaggttacatttctgcctccagggggcgt 440
Query: 241 ttgttttcta--ttttaggagattagaaagggtgagcagcaattagcatctaatgggtgg 298
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgg---caacattttaggagattagaaagggtgagcagcaattagcatctaatgggtgg 497
Query: 299 aggtcaacttcattgctaaacatccaacaaacacacaggatacctccacacacacagaga 358
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 498 aggtcaacttcattgctaaacatccaacag-cacacaggatacctccacacacacagaga 556
Query: 359 acaacaaagaattatcaacttcaaatcgtcaacagtgataaaaagagataccttgcattc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acaacaaagaattatcaacttcaaatcgtcaacagtgataaaaagagataccttgcattc 616
Query: 419 tgaagcttgcaaaaattccatttttcaaatctttcataggtgtctaattaaaagataagc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgaagcttgcaaaaattccatttttcaaatctttcataggtgtctaattaaaagataagc 676
Query: 479 tgccactatcaccgggagggctcattttacaactgctttaaatgtggtggatggtagctc 538
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgccactatcactgggagggctcattttacaactgctttaaatgtggtggatggtagctc 736
Query: 539 caactgagaacagtgttacaacc 561
|||||||||||||| ||||||||
Sbjct: 737 caactgagaacagtattacaacc 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
