Query= MSMg01no480_m16.b1 MSMg01no480_m16.b1 CHROMAT_FILE:
MSMg01no480_m16.b1 PHD_FILE: MSMg01no480_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:12 2005
(390 letters)
>mm_chr5_89536789_89537578
Length = 790
Score = 675 bits (349), Expect = 0.0
Identities = 364/369 (98%)
Strand = Plus / Minus
Query: 3 cagcaaagctattaaacacgagcttcacaaagacttcatgacatcttactatatttgtta 62
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 369 cagcaaagctattaaacacgagcttcacaaagacttcatgacattttagtatatttgtta 310
Query: 63 taagatgtgggacttcggtgcaatctatcctaaaggcaaaacattcttcttgccgattaa 122
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taagatgtgggacttcagtgcaatctatcctaaaggcaaaacattcttcttgccgattaa 250
Query: 123 aagatatcattggattattaaacacaacatccctatagcctagatgcacatattcaaaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aagatatcattggattattaaacacaacatccctatagcctagatgcacatattcaaaca 190
Query: 183 tattcaaatgcagccaaacctgtgcagtcactaaaacttatggccttaactacaagcctt 242
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 189 tattcaaatgcagccaaacctgtgcagtcactaaaacttgtggccttaactacaagcctt 130
Query: 243 ataaaagaaaggctaaagatctatgtgtacacatcaagaagaataaaataatatgggaga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ataaaagaaaggctaaagatctatgtgtacacatcaagaagaataaaataatatgggaga 70
Query: 303 gtttgggtgtgtcgctcaaagatagggcatatgtctagtgtgcacaaggctctggacagg 362
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 69 gtttgggtgtgtcgctcaaagatagggcatatgcctagtgtgcacaaggctctggacagg 10
Query: 363 ccacacaca 371
|||||||||
Sbjct: 9 ccacacaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space: 297561
Effective search space used: 297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_m16.g1 MSMg01no480_m16.g1 CHROMAT_FILE:
MSMg01no480_m16.g1 PHD_FILE: MSMg01no480_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:12 2005
(230 letters)
>mm_chr5_89341640_89342270
Length = 631
Score = 397 bits (205), Expect = e-115
Identities = 214/217 (98%), Gaps = 1/217 (0%)
Strand = Plus / Plus
Query: 1 aggccacaggaccagacctggggctacagcgcatagctgccatggcacagagccagtttg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aggccacaggaccagacctggggctacagcgcagagctgccatggcacagagccagtttg 260
Query: 61 actgaagaaacatgggatatgagtcagctggtggttt-ggtctttcaaaaggacagagat 119
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 actgaagaaacatgggatatgagtcagctggtggttttggtctttcaaaaggacagagat 320
Query: 120 gttgcttgtgtctgtcattgtgcattggtagtgtgcatgtctatctgtttgcctctcatg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgcttgtgtctgtcattgtgcattggtagtgtgcatgtctatctgtttgcctctcatg 380
Query: 180 caggtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 216
||||| |||||||||||||||||||||||||||||||
Sbjct: 381 caggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 631
Length adjustment: 9
Effective length of query: 221
Effective length of database: 622
Effective search space: 137462
Effective search space used: 137462
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
