Query= MSMg01no481_l08.b1 MSMg01no481_l08.b1 CHROMAT_FILE:
MSMg01no481_l08.b1 PHD_FILE: MSMg01no481_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:26 2005
(499 letters)
>mm_chr5_57782135_57783033
Length = 899
Score = 665 bits (344), Expect = 0.0
Identities = 381/400 (95%), Gaps = 12/400 (3%)
Strand = Plus / Plus
Query: 1 tcagataaagctaaagagtgatcaaacctatcttggagctcttaaaacatcatactggac 60
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tcagataaagctaaagagtggtcaaacctatcttggagctcataaaacatcatactggac 260
Query: 61 aatatgataacaaagcctaggacttcagtaattttcctcagtaaaaatgatttatttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatgataacaaagcctaggacttcagtaattttcctcagtaaaaatgatttatttttc 320
Query: 121 ttttagttgcaatcacgagtgcataatttcaagtggagttatttttattgaacactttgc 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ttttagttgcaatcacgagtgcataatttcaaatggagttatttttattgaacactttgc 380
Query: 181 acaagaaagttgaagaccttgccgaactctgagaagcatgtcagcacagccatccattta 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 acaagaaagttgaagaccttgccgaactctgagaagcatgtcagcacagtcatccattta 440
Query: 241 ctgtgtttttta------tactgctttgctctgttggattatattattgttaaagtttag 294
||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtg------aagaccatactgctttgctctgttggattatattattgttaaagtttag 494
Query: 295 tataaaaacattgctgtatgcctcaagacaatatttagttggaatgcgactgttcaccag 354
||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||
Sbjct: 495 tataaaaacattgctgtatgcctcaaggcaatatttagttggaatgtgattgttcaccag 554
Query: 355 cattatttaatagcttaattcatttaaaaagtaaaaaaaa 394
||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cattatttaatagcttaattcatttaaaaagtaaaaaaaa 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_l08.g1 MSMg01no481_l08.g1 CHROMAT_FILE:
MSMg01no481_l08.g1 PHD_FILE: MSMg01no481_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:26 2005
(542 letters)
>mm_chr5_57919971_57920908
Length = 938
Score = 1015 bits (525), Expect = 0.0
Identities = 536/541 (99%), Gaps = 4/541 (0%)
Strand = Plus / Minus
Query: 1 taaagtgctcctataaaatgccttttctgctgtaccttgacctgtataacatccaaatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 taaagtgctcctataaaatgccttttctgctgtaccttgacctgtataacatccaaatag 478
Query: 61 aggcacttgaggaagttacaatgaataaggctgaacatttgagacacaaatataggaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aggcacttgaggaagttacaatgaataaggctgaacatttgagacacaaatataggaaat 418
Query: 121 atacaagaaataaaaggtagaaatctccttacttttcaaaatattaagtttctattaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atacaagaaataaaaggtagaaatctccttacttttcaaaatattaagtttctattaaag 358
Query: 181 gagaagcttagccagatggtaaaatggaaaaggccaagggcccagggtcacaagagagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gagaagcttagccagatggtaaaatggaaaaggccaagggcccagggtcacaagagagag 298
Query: 241 cctggctagtgttactttctgcattgggttcctcttctctgttgataaaagaatcaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cctggctagtgttactttctgcattgggttcctcttctctgttgataaaagaatcaaaga 238
Query: 301 gcaggaagatttcccccccccacccccccccaccccgagacttcgagacagggtttctct 360
|||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||
Sbjct: 237 gcaggaagatttcccccc---acccccccc-accccgagactttgagacagggtttctct 182
Query: 361 ttatagtgctggctgtcctggaactcactttgtagaccaggctggcctcgaactcagata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatagtgctggctgtcctggaactcactttgtagaccaggctggcctcgaactcagata 122
Query: 421 tctgcctgcctctgcctcctgagtgctgggattaaaggtgtatgccaccacacctgaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctgcctgcctctgcctcctgagtgctgggattaaaggtgtatgccaccacacctgaaca 62
Query: 481 gtctcggttttaattttagcttctaagaataactttaggctattgttctgaaagtcgaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcggttttaattttagcttctaagaataactttaggctattgttctgaaagtcgaag 2
Query: 541 c 541
|
Sbjct: 1 c 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 938
Length adjustment: 10
Effective length of query: 532
Effective length of database: 928
Effective search space: 493696
Effective search space used: 493696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
